Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC097376.2-205ENST00000610159 5334 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 AC041040.2-201ENST00000622926 2899 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC108725.1-201ENST00000495472 409 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 MARK2P5-201ENST00000507649 634 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN9P43378 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.01□□□□□ -0.01
PTPN9P43378 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 AP002353.1-201ENST00000528257 1599 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN9P43378 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15□□□□□ -0.01
PTPN9P43378 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15□□□□□ -0.01
PTPN9P43378 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15□□□□□ -0.01
PTPN9P43378 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
PTPN9P43378 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15□□□□□ -0.01
PTPN9P43378 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 AL512310.5-201ENST00000551999 515 ntBASIC15□□□□□ -0.01
PTPN9P43378 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTPN9P43378 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15□□□□□ -0.01
PTPN9P43378 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15□□□□□ -0.01
PTPN9P43378 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 AL157996.1-201ENST00000624684 2299 ntBASIC15□□□□□ -0.01
PTPN9P43378 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
PTPN9P43378 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTPN9P43378 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15□□□□□ -0.01
PTPN9P43378 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTPN9P43378 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTPN9P43378 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms