Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CIITAP33076 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CIITAP33076 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
CIITAP33076 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 AC005089.1-201ENST00000619486 2241 ntBASIC16.21■□□□□ 0.19
CIITAP33076 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CIITAP33076 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.21■□□□□ 0.19
CIITAP33076 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 RN7SL720P-201ENST00000488178 304 ntBASIC16.21■□□□□ 0.19
CIITAP33076 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CIITAP33076 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.21■□□□□ 0.19
CIITAP33076 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.21■□□□□ 0.19
CIITAP33076 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.21■□□□□ 0.19
CIITAP33076 CICP16-201ENST00000502609 2813 ntBASIC16.21■□□□□ 0.19
CIITAP33076 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CIITAP33076 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CIITAP33076 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
CIITAP33076 AC139749.1-202ENST00000617529 3139 ntBASIC16.21■□□□□ 0.18
CIITAP33076 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CIITAP33076 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
CIITAP33076 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.2■□□□□ 0.18
CIITAP33076 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 KRT8P31-201ENST00000504812 1408 ntBASIC16.2■□□□□ 0.18
CIITAP33076 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
CIITAP33076 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.2■□□□□ 0.18
CIITAP33076 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 OR8T1P-201ENST00000421347 918 ntBASIC16.2■□□□□ 0.18
CIITAP33076 AC026320.2-201ENST00000434379 478 ntBASIC16.2■□□□□ 0.18
CIITAP33076 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.2■□□□□ 0.18
CIITAP33076 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 RN7SL769P-201ENST00000469386 295 ntBASIC16.2■□□□□ 0.18
CIITAP33076 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 RTN3P1-201ENST00000536295 711 ntBASIC16.2■□□□□ 0.18
CIITAP33076 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 AC006453.1-201ENST00000636037 1257 ntBASIC16.2■□□□□ 0.18
CIITAP33076 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.2■□□□□ 0.18
CIITAP33076 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CIITAP33076 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CIITAP33076 LINC00115-201ENST00000473798 1317 ntBASIC16.19■□□□□ 0.18
CIITAP33076 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms