Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.42□□□□□ -0.42
SDCBPO00560 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.42□□□□□ -0.42
SDCBPO00560 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC12.42□□□□□ -0.42
SDCBPO00560 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
SDCBPO00560 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 AC190387.1-201ENST00000551683 408 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 DUX4L47-201ENST00000566374 394 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 AP001063.1-201ENST00000568332 529 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 CTBP2P3-201ENST00000585629 1255 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.42□□□□□ -0.42
SDCBPO00560 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.42□□□□□ -0.42
SDCBPO00560 AC005252.2-201ENST00000624630 1141 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 AL603764.1-201ENST00000636452 321 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
SDCBPO00560 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.42□□□□□ -0.42
SDCBPO00560 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 NUTM2HP-201ENST00000442076 2498 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.41□□□□□ -0.42
SDCBPO00560 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.41□□□□□ -0.42
SDCBPO00560 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC12.41□□□□□ -0.42
SDCBPO00560 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.41□□□□□ -0.42
SDCBPO00560 AC007969.1-201ENST00000433675 447 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 GIMAP3P-201ENST00000495150 836 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.41□□□□□ -0.42
SDCBPO00560 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.41□□□□□ -0.42
SDCBPO00560 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 AL355385.1-201ENST00000606123 409 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 WFDC1-204ENST00000613603 549 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 AC020658.7-201ENST00000624274 2442 ntBASIC12.41□□□□□ -0.42
SDCBPO00560 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.41□□□□□ -0.42
SDCBPO00560 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SDCBPO00560 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.41□□□□□ -0.42
SDCBPO00560 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms