Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 AL157813.1-201ENST00000612996 587 ntBASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 AC010327.5-201ENST00000586923 3061 ntBASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.04■□□□□ 0.16
BLOC1S4Q9NUP1 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 KRT18P15-201ENST00000458108 1291 ntBASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 AL451050.2-201ENST00000606967 682 ntBASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BLOC1S4Q9NUP1 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 FAM86MP-201ENST00000340703 885 ntBASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 AC004898.1-201ENST00000451057 766 ntBASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 AC005740.2-201ENST00000511085 419 ntBASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 AL512310.5-201ENST00000551999 515 ntBASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 MIR4538-201ENST00000581377 78 ntBASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BLOC1S4Q9NUP1 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 AL928654.5-201ENST00000624831 2501 ntBASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BLOC1S4Q9NUP1 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms