Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC3Q9BQI4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC018529.2-202ENST00000611482 3087 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 FGD5P1-202ENST00000614866 2498 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 OR2K2-202ENST00000374428 1038 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 RN7SL67P-201ENST00000492147 296 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC026803.1-201ENST00000569130 274 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC073352.2-201ENST00000609385 439 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AC051619.9-201ENST00000623237 597 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 FAM90A2P-201ENST00000511144 1395 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 FAM90A25P-201ENST00000528404 1395 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 DMBT1P1-203ENST00000636837 4628 ntBASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC3Q9BQI4 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MRPL37P1-201ENST00000592451 1337 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms