Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 Z97205.2-201ENST00000564697 1639 ntBASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 IKZF4-202ENST00000431367 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 MCCD1P2-201ENST00000423228 335 ntBASIC11.06□□□□□ -0.64
AP1S3Q96PC3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SAMD11P1-201ENST00000571429 661 ntBASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 ACACB-201ENST00000338432 9360 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 WDR47-201ENST00000357672 4144 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 SCN4A-201ENST00000435607 7805 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
AP1S3Q96PC3 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PLEKHG4-204ENST00000427155 4455 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CRTAP-201ENST00000320954 6630 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 SVIL-201ENST00000355867 7586 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PTGIS-201ENST00000244043 5579 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 TMEM164-202ENST00000372068 5566 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AL121723.1-201ENST00000445194 1519 ntBASIC11.05□□□□□ -0.64
AP1S3Q96PC3 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 OPRK1-206ENST00000613482 4682 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 ADAMTS4-202ENST00000367996 9773 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 NPHS1-202ENST00000378910 4276 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 KRT126P-201ENST00000549467 1181 ntBASIC11.05□□□□□ -0.64
AP1S3Q96PC3 PAPLN-208ENST00000555445 4282 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
AP1S3Q96PC3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms