RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 DCAF8L2P0C7V8 631 aa19.16■□□□□ 0.66
SCN4A-201ENST00000435607 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
SCN4A-201ENST00000435607 FAM9AQ8IZU1 332 aaPredicted RBP18.02■□□□□ 0.48
SCN4A-201ENST00000435607 APLP2Q06481 763 aa17.72■□□□□ 0.43
SCN4A-201ENST00000435607 SUPT5HO00267 1087 aaKnown RBP17.66■□□□□ 0.42
SCN4A-201ENST00000435607 EHMT2Q96KQ7 1210 aa17.39■□□□□ 0.37
SCN4A-201ENST00000435607 CCER1Q8TC90 406 aaPredicted RBP17.31■□□□□ 0.36
SCN4A-201ENST00000435607 ERICH6Q7L0X2 663 aa17.25■□□□□ 0.35
SCN4A-201ENST00000435607 SHROOM4Q9ULL8 1493 aa17.1■□□□□ 0.33
SCN4A-201ENST00000435607 ATP1B4Q9UN42 357 aaPredicted RBP17■□□□□ 0.31
SCN4A-201ENST00000435607 NISCHQ9Y2I1 1504 aa16.83■□□□□ 0.28
SCN4A-201ENST00000435607 TTBK1Q5TCY1 1321 aaPredicted RBP16.82■□□□□ 0.28
SCN4A-201ENST00000435607 CENPBP07199 599 aaPredicted RBP16.8■□□□□ 0.28
SCN4A-201ENST00000435607 RANGAP1P46060 587 aaPredicted RBP16.79■□□□□ 0.28
SCN4A-201ENST00000435607 NEFLP07196 543 aa16.78■□□□□ 0.28
SCN4A-201ENST00000435607 MYT1LQ9UL68 1186 aa16.76■□□□□ 0.27
SCN4A-201ENST00000435607 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
SCN4A-201ENST00000435607 DAXXQ9UER7 740 aaPredicted RBP16.63■□□□□ 0.25
SCN4A-201ENST00000435607 ZEB1P37275 1124 aaPredicted RBP16.6■□□□□ 0.25
SCN4A-201ENST00000435607 UBTFP17480 764 aaKnown RBP16.55■□□□□ 0.24
SCN4A-201ENST00000435607 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
SCN4A-201ENST00000435607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
SCN4A-201ENST00000435607 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
SCN4A-201ENST00000435607 YTHDC1Q96MU7 727 aaKnown RBP16.43■□□□□ 0.22
SCN4A-201ENST00000435607 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
SCN4A-201ENST00000435607 POLR3GLQ9BT43 218 aa16.32■□□□□ 0.2
SCN4A-201ENST00000435607 CHIC1Q5VXU3 224 aa16.29■□□□□ 0.2
SCN4A-201ENST00000435607 MYT1Q01538 1121 aa16.25■□□□□ 0.19
SCN4A-201ENST00000435607 CLSPNQ9HAW4 1339 aa16.12■□□□□ 0.17
SCN4A-201ENST00000435607 ZNF316A6NFI3 1004 aaPredicted RBP16.11■□□□□ 0.17
SCN4A-201ENST00000435607 ZBTB47Q9UFB7 747 aaPredicted RBP16.06■□□□□ 0.16
SCN4A-201ENST00000435607 ITGAEP38570 1179 aa16.03■□□□□ 0.16
SCN4A-201ENST00000435607 CNGB1Q14028 1251 aaPredicted RBP15.96■□□□□ 0.15
SCN4A-201ENST00000435607 RTL5Q5HYW3 569 aaPredicted RBP15.92■□□□□ 0.14
SCN4A-201ENST00000435607 SLC24A1O60721 1099 aa15.9■□□□□ 0.14
SCN4A-201ENST00000435607 NEFMP07197 916 aa15.85■□□□□ 0.13
SCN4A-201ENST00000435607 BCANQ96GW7 911 aa15.84■□□□□ 0.13
SCN4A-201ENST00000435607 PPARGC1BQ86YN6 1023 aaKnown RBP15.77■□□□□ 0.12
SCN4A-201ENST00000435607 TRIM52Q96A61 297 aa15.71■□□□□ 0.11
SCN4A-201ENST00000435607 ESF1Q9H501 851 aaKnown RBP15.69■□□□□ 0.1
SCN4A-201ENST00000435607 TRIM26Q12899 539 aaPredicted RBP15.69■□□□□ 0.1
SCN4A-201ENST00000435607 CANXP27824 592 aaKnown RBP15.66■□□□□ 0.1
SCN4A-201ENST00000435607 FAM50AQ14320 339 aaKnown RBP15.64■□□□□ 0.09
SCN4A-201ENST00000435607 FBLN2P98095 1184 aa15.57■□□□□ 0.08
SCN4A-201ENST00000435607 BCL11AQ9H165 835 aa15.56■□□□□ 0.08
SCN4A-201ENST00000435607 ZNF326Q5BKZ1 582 aaKnown RBP15.52■□□□□ 0.07
SCN4A-201ENST00000435607 STAG3Q9UJ98 1225 aa15.47■□□□□ 0.07
SCN4A-201ENST00000435607 ANP32BQ92688 251 aaKnown RBP15.44■□□□□ 0.06
SCN4A-201ENST00000435607 CDK11BP21127 795 aaKnown RBP15.44■□□□□ 0.06
SCN4A-201ENST00000435607 CDK11AQ9UQ88 783 aaPredicted RBP15.44■□□□□ 0.06
SCN4A-201ENST00000435607 ANP32CO43423 234 aa15.43■□□□□ 0.06
SCN4A-201ENST00000435607 NEUROD1Q13562 356 aa15.41■□□□□ 0.06
SCN4A-201ENST00000435607 HRCP23327 699 aa15.4■□□□□ 0.06
SCN4A-201ENST00000435607 NPM1P06748 294 aaKnown RBP eCLIP15.37■□□□□ 0.05
SCN4A-201ENST00000435607 NPM2Q86SE8 214 aaKnown RBP15.34■□□□□ 0.05
SCN4A-201ENST00000435607 HSP90AA1P07900 732 aaKnown RBP15.34■□□□□ 0.05
SCN4A-201ENST00000435607 PLPPR3Q6T4P5 718 aa15.33■□□□□ 0.04
SCN4A-201ENST00000435607 DIEXFQ68CQ4 756 aaKnown RBP15.27■□□□□ 0.03
SCN4A-201ENST00000435607 UPF2Q9HAU5 1272 aaKnown RBP15.26■□□□□ 0.03
SCN4A-201ENST00000435607 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
SCN4A-201ENST00000435607 A0A0G2JS52 829 aa15.24■□□□□ 0.03
SCN4A-201ENST00000435607 CHGAP10645 457 aaKnown RBP15.24■□□□□ 0.03
SCN4A-201ENST00000435607 ANP32AP39687 249 aaKnown RBP15.23■□□□□ 0.03
SCN4A-201ENST00000435607 ZNF777Q9ULD5 760 aaPredicted RBP15.2■□□□□ 0.02
SCN4A-201ENST00000435607 PABPN1Q86U42 306 aaKnown RBP eCLIP15.14■□□□□ 0.01
SCN4A-201ENST00000435607 LOC105371045A0A1W2PR82 267 aa15.11■□□□□ 0.01
SCN4A-201ENST00000435607 ARID3CA6NKF2 412 aa15.07■□□□□ 0
SCN4A-201ENST00000435607 HAP1P54257 671 aaPredicted RBP15.07■□□□□ 0
SCN4A-201ENST00000435607 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.06■□□□□ 0
SCN4A-201ENST00000435607 MYH16Q9H6N6 1097 aa15.06■□□□□ 0
SCN4A-201ENST00000435607 C14orf37Q86TY3 774 aa15.04■□□□□ -0
SCN4A-201ENST00000435607 ABCC9O60706 1549 aa15□□□□□ -0.01
SCN4A-201ENST00000435607 P3H3Q8IVL6 736 aa14.98□□□□□ -0.01
SCN4A-201ENST00000435607 GLIPR1L2Q4G1C9 344 aa14.98□□□□□ -0.01
SCN4A-201ENST00000435607 ZBTB7CA1YPR0 619 aa14.96□□□□□ -0.01
SCN4A-201ENST00000435607 WDR43Q15061 677 aaKnown RBP eCLIP14.95□□□□□ -0.02
SCN4A-201ENST00000435607 NPHP1O15259 732 aa14.94□□□□□ -0.02
SCN4A-201ENST00000435607 PPP1R15AO75807 674 aaPredicted RBP14.93□□□□□ -0.02
SCN4A-201ENST00000435607 NCLP19338 710 aaKnown RBP14.91□□□□□ -0.02
SCN4A-201ENST00000435607 ZRSR1Q15695 479 aaKnown RBP14.91□□□□□ -0.02
SCN4A-201ENST00000435607 TONSLQ96HA7 1378 aa14.9□□□□□ -0.02
SCN4A-201ENST00000435607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.89□□□□□ -0.03
SCN4A-201ENST00000435607 ARXQ96QS3 562 aa14.89□□□□□ -0.03
SCN4A-201ENST00000435607 EIF5BO60841 1220 aaKnown RBP14.88□□□□□ -0.03
SCN4A-201ENST00000435607 TULP1O00294 542 aaPredicted RBP14.87□□□□□ -0.03
SCN4A-201ENST00000435607 TSPY4P0CV99 314 aa14.86□□□□□ -0.03
SCN4A-201ENST00000435607 TSPY10P0CW01 314 aa14.86□□□□□ -0.03
SCN4A-201ENST00000435607 TMC1Q8TDI8 760 aa14.85□□□□□ -0.03
SCN4A-201ENST00000435607 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
SCN4A-201ENST00000435607 ARID4BQ4LE39 1312 aaPredicted RBP14.83□□□□□ -0.04
SCN4A-201ENST00000435607 CASC1Q6TDU7 716 aa14.78□□□□□ -0.04
SCN4A-201ENST00000435607 GOLGA6L22H0YM25 854 aa14.76□□□□□ -0.05
SCN4A-201ENST00000435607 GTF3C3Q9Y5Q9 886 aa14.76□□□□□ -0.05
SCN4A-201ENST00000435607 SALL2Q9Y467 1007 aaPredicted RBP14.76□□□□□ -0.05
SCN4A-201ENST00000435607 ANP32EQ9BTT0 268 aa14.75□□□□□ -0.05
SCN4A-201ENST00000435607 GOLGA2Q08379 1002 aa14.75□□□□□ -0.05
SCN4A-201ENST00000435607 FAM9BQ8IZU0 186 aa14.74□□□□□ -0.05
SCN4A-201ENST00000435607 CCDC136Q96JN2 1154 aa14.73□□□□□ -0.05
SCN4A-201ENST00000435607 EIF4G2P78344 907 aaKnown RBP eCLIP14.73□□□□□ -0.05
SCN4A-201ENST00000435607 HNRNPUQ00839 825 aaKnown RBP eCLIP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms