Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 AL031673.1-201ENST00000611460 466 ntBASIC17.85■□□□□ 0.45
RC3H1Q5TC82 AC126755.5-201ENST00000622756 267 ntBASIC17.85■□□□□ 0.45
RC3H1Q5TC82 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.85■□□□□ 0.45
RC3H1Q5TC82 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 RN7SL121P-201ENST00000584223 273 ntBASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
RC3H1Q5TC82 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RC3H1Q5TC82 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 SIRPB3P-201ENST00000340424 1216 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 HMGA1P1-201ENST00000415560 1062 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 EEF1DP2-201ENST00000433698 843 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC092896.1-201ENST00000465850 380 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC092612.1-201ENST00000514501 998 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AL590235.1-201ENST00000564650 861 ntBASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RC3H1Q5TC82 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms