Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC14.28□□□□□ -0.12
LIMK1P53667 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 CICP14-201ENST00000629111 2732 ntBASIC14.28□□□□□ -0.12
LIMK1P53667 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
LIMK1P53667 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.27□□□□□ -0.12
LIMK1P53667 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.27□□□□□ -0.12
LIMK1P53667 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LIMK1P53667 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.27□□□□□ -0.12
LIMK1P53667 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 TMBIM7P-202ENST00000641474 1516 ntBASIC14.27□□□□□ -0.12
LIMK1P53667 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.27□□□□□ -0.12
LIMK1P53667 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIMK1P53667 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
LIMK1P53667 UROS-201ENST00000368774 744 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC14.27□□□□□ -0.13
LIMK1P53667 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 RN7SL494P-201ENST00000461517 304 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.27□□□□□ -0.13
LIMK1P53667 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.27□□□□□ -0.13
LIMK1P53667 HERC2P11-201ENST00000562845 725 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 AC100756.2-201ENST00000569537 736 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
LIMK1P53667 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 AL157414.3-201ENST00000624276 1954 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 AL137783.1-201ENST00000623494 1896 ntBASIC14.27□□□□□ -0.13
LIMK1P53667 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
LIMK1P53667 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.27□□□□□ -0.13
LIMK1P53667 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIMK1P53667 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 AC021305.1-201ENST00000520656 1514 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.26□□□□□ -0.13
LIMK1P53667 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
LIMK1P53667 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
LIMK1P53667 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.26□□□□□ -0.13
LIMK1P53667 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms