Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
PTPN9P43378 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.03■□□□□ -0
PTPN9P43378 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 ACTBP11-201ENST00000436287 1126 ntBASIC15.03■□□□□ -0
PTPN9P43378 AC104306.2-201ENST00000451877 341 ntBASIC15.03■□□□□ -0
PTPN9P43378 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.03■□□□□ -0
PTPN9P43378 AC009779.1-201ENST00000551138 283 ntBASIC15.03■□□□□ -0
PTPN9P43378 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
PTPN9P43378 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.03■□□□□ -0
PTPN9P43378 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PTPN9P43378 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN9P43378 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.02■□□□□ -0
PTPN9P43378 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC15.02■□□□□ -0
PTPN9P43378 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
PTPN9P43378 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.02■□□□□ -0
PTPN9P43378 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 BEND3P1-201ENST00000421591 1944 ntBASIC15.02■□□□□ -0
PTPN9P43378 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.02■□□□□ -0
PTPN9P43378 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.02■□□□□ -0
PTPN9P43378 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.02■□□□□ -0
PTPN9P43378 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN9P43378 AC092580.1-201ENST00000433998 658 ntBASIC15.02■□□□□ -0
PTPN9P43378 AC004898.1-201ENST00000451057 766 ntBASIC15.02■□□□□ -0
PTPN9P43378 KRT18P15-201ENST00000458108 1291 ntBASIC15.02■□□□□ -0
PTPN9P43378 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.02■□□□□ -0
PTPN9P43378 AC005740.2-201ENST00000511085 419 ntBASIC15.02■□□□□ -0
PTPN9P43378 AC013355.1-201ENST00000562625 723 ntBASIC15.02■□□□□ -0
PTPN9P43378 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.02■□□□□ -0
PTPN9P43378 BAP1-211ENST00000615113 489 ntBASIC15.02■□□□□ -0
PTPN9P43378 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
PTPN9P43378 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
PTPN9P43378 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.02□□□□□ -0.01
PTPN9P43378 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
PTPN9P43378 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC15.02□□□□□ -0.01
PTPN9P43378 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN9P43378 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PTPN9P43378 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN9P43378 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN9P43378 AC007952.5-201ENST00000572818 1486 ntBASIC15.01□□□□□ -0.01
PTPN9P43378 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms