Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC18.39■□□□□ 0.53
COL18A1P39060 AC004923.3-201ENST00000527532 355 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 RN7SL121P-201ENST00000584223 273 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.39■□□□□ 0.53
COL18A1P39060 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
COL18A1P39060 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 LILRP2-202ENST00000413572 1383 ntBASIC18.38■□□□□ 0.53
COL18A1P39060 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC18.38■□□□□ 0.53
COL18A1P39060 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 AL137244.1-201ENST00000422931 865 ntBASIC18.38■□□□□ 0.53
COL18A1P39060 AP003040.1-201ENST00000532044 1024 ntBASIC18.38■□□□□ 0.53
COL18A1P39060 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC18.38■□□□□ 0.53
COL18A1P39060 RN7SL605P-201ENST00000577229 281 ntBASIC18.38■□□□□ 0.53
COL18A1P39060 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC18.38■□□□□ 0.53
COL18A1P39060 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 AC104640.1-201ENST00000562617 2109 ntBASIC18.38■□□□□ 0.53
COL18A1P39060 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL18A1P39060 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 CD37-203ENST00000426897 1204 ntTSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL18A1P39060 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 AC008620.2-201ENST00000510294 1569 ntBASIC18.37■□□□□ 0.53
COL18A1P39060 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 RPL29P2-202ENST00000498671 657 ntBASIC18.37■□□□□ 0.53
COL18A1P39060 AC147876.1-201ENST00000504408 322 ntBASIC18.37■□□□□ 0.53
COL18A1P39060 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC18.37■□□□□ 0.53
COL18A1P39060 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC18.37■□□□□ 0.53
COL18A1P39060 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 MIR5091-201ENST00000578707 93 ntBASIC18.37■□□□□ 0.53
COL18A1P39060 RN7SL134P-201ENST00000579756 303 ntBASIC18.37■□□□□ 0.53
COL18A1P39060 PHF23-213ENST00000613632 850 ntTSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC18.37■□□□□ 0.53
COL18A1P39060 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL18A1P39060 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC18.37■□□□□ 0.53
COL18A1P39060 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL18A1P39060 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 KRT8P42-201ENST00000405771 1399 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms