Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.24■□□□□ 0.19
CIITAP33076 TCAM1P-207ENST00000485295 1537 ntBASIC16.24■□□□□ 0.19
CIITAP33076 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.24■□□□□ 0.19
CIITAP33076 BRD7P5-201ENST00000299197 1822 ntBASIC16.24■□□□□ 0.19
CIITAP33076 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.24■□□□□ 0.19
CIITAP33076 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.24■□□□□ 0.19
CIITAP33076 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CIITAP33076 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CIITAP33076 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CIITAP33076 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CIITAP33076 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.23■□□□□ 0.19
CIITAP33076 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 BANF1P3-201ENST00000412556 261 ntBASIC16.23■□□□□ 0.19
CIITAP33076 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CIITAP33076 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 CD164-210ENST00000512821 964 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 AC245884.6-201ENST00000515672 1067 ntBASIC16.23■□□□□ 0.19
CIITAP33076 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 KRT8P1-201ENST00000557533 1207 ntBASIC16.23■□□□□ 0.19
CIITAP33076 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.23■□□□□ 0.19
CIITAP33076 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.23■□□□□ 0.19
CIITAP33076 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.23■□□□□ 0.19
CIITAP33076 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.23■□□□□ 0.19
CIITAP33076 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.23■□□□□ 0.19
CIITAP33076 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CIITAP33076 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 AC015656.1-201ENST00000624209 3578 ntBASIC16.22■□□□□ 0.19
CIITAP33076 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.22■□□□□ 0.19
CIITAP33076 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.22■□□□□ 0.19
CIITAP33076 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CIITAP33076 AC103592.1-201ENST00000394513 664 ntBASIC16.22■□□□□ 0.19
CIITAP33076 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.22■□□□□ 0.19
CIITAP33076 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.22■□□□□ 0.19
CIITAP33076 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.22■□□□□ 0.19
CIITAP33076 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.22■□□□□ 0.19
CIITAP33076 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.22■□□□□ 0.19
CIITAP33076 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 AL109837.1-201ENST00000603272 613 ntBASIC16.22■□□□□ 0.19
CIITAP33076 LINC01783-202ENST00000614408 828 ntBASIC16.22■□□□□ 0.19
CIITAP33076 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC16.22■□□□□ 0.19
CIITAP33076 BX284668.2-205ENST00000619677 828 ntBASIC16.22■□□□□ 0.19
CIITAP33076 AC079336.7-201ENST00000623428 1078 ntBASIC16.22■□□□□ 0.19
CIITAP33076 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.22■□□□□ 0.19
CIITAP33076 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CIITAP33076 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms