Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.87■□□□□ 0.61
HOXC9P31274 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 RN7SL494P-201ENST00000461517 304 ntBASIC18.87■□□□□ 0.61
HOXC9P31274 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
HOXC9P31274 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 AP001267.2-201ENST00000532619 2086 ntBASIC18.87■□□□□ 0.61
HOXC9P31274 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC9P31274 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.87■□□□□ 0.61
HOXC9P31274 TRMT112P3-201ENST00000580149 358 ntBASIC18.87■□□□□ 0.61
HOXC9P31274 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 AC010976.2-201ENST00000609697 852 ntBASIC18.87■□□□□ 0.61
HOXC9P31274 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC9P31274 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.87■□□□□ 0.61
HOXC9P31274 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC9P31274 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC9P31274 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
HOXC9P31274 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC9P31274 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.86■□□□□ 0.61
HOXC9P31274 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC9P31274 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HOXC9P31274 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC9P31274 GOLGA2P8-201ENST00000505201 779 ntBASIC18.86■□□□□ 0.61
HOXC9P31274 EEF1GP8-201ENST00000506566 1154 ntBASIC18.86■□□□□ 0.61
HOXC9P31274 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC18.86■□□□□ 0.61
HOXC9P31274 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.86■□□□□ 0.61
HOXC9P31274 AC013553.1-201ENST00000560906 267 ntBASIC18.86■□□□□ 0.61
HOXC9P31274 AC055811.3-201ENST00000584952 686 ntBASIC18.86■□□□□ 0.61
HOXC9P31274 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HOXC9P31274 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC9P31274 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 DUT-208ENST00000559540 1441 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXC9P31274 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
HOXC9P31274 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 RN7SKP155-201ENST00000516031 288 ntBASIC18.85■□□□□ 0.61
HOXC9P31274 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXC9P31274 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 COX5A-205ENST00000568517 582 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXC9P31274 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.85■□□□□ 0.61
HOXC9P31274 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms