Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.09■□□□□ 0.17
TPM1P09493 AC104794.3-201ENST00000566840 1248 ntBASIC16.09■□□□□ 0.17
TPM1P09493 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.09■□□□□ 0.17
TPM1P09493 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 AC083964.2-201ENST00000623988 2396 ntBASIC16.09■□□□□ 0.17
TPM1P09493 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 AC022144.1-201ENST00000602255 1580 ntBASIC16.09■□□□□ 0.17
TPM1P09493 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TPM1P09493 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
TPM1P09493 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TPM1P09493 FAM90A12P-201ENST00000519497 2375 ntBASIC16.08■□□□□ 0.17
TPM1P09493 FAM90A24P-201ENST00000520792 2369 ntBASIC16.08■□□□□ 0.17
TPM1P09493 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC16.08■□□□□ 0.17
TPM1P09493 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TPM1P09493 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TPM1P09493 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
TPM1P09493 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.08■□□□□ 0.17
TPM1P09493 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
TPM1P09493 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TPM1P09493 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TPM1P09493 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
TPM1P09493 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.08■□□□□ 0.16
TPM1P09493 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 EIF3FP3-201ENST00000434851 1086 ntBASIC16.08■□□□□ 0.16
TPM1P09493 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.08■□□□□ 0.16
TPM1P09493 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.08■□□□□ 0.16
TPM1P09493 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.08■□□□□ 0.16
TPM1P09493 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.08■□□□□ 0.16
TPM1P09493 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.08■□□□□ 0.16
TPM1P09493 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 AC008738.7-201ENST00000609744 511 ntBASIC16.08■□□□□ 0.16
TPM1P09493 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TPM1P09493 AC004840.1-201ENST00000636359 365 ntBASIC16.08■□□□□ 0.16
TPM1P09493 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TPM1P09493 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TPM1P09493 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TPM1P09493 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.08■□□□□ 0.16
TPM1P09493 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 AC118758.2-201ENST00000614242 2813 ntBASIC16.08■□□□□ 0.16
TPM1P09493 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.08■□□□□ 0.16
TPM1P09493 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TPM1P09493 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
TPM1P09493 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TPM1P09493 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 INVS-201ENST00000262456 2968 ntTSL 5 BASIC16.07■□□□□ 0.16
TPM1P09493 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TPM1P09493 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.07■□□□□ 0.16
TPM1P09493 SOCS2P1-201ENST00000417727 557 ntBASIC16.07■□□□□ 0.16
TPM1P09493 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM1P09493 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.07■□□□□ 0.16
TPM1P09493 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM1P09493 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms