Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KIAA1549-202ENST00000440172 12379 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 CARS-214ENST00000529772 2637 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AP000347.1-202ENST00000435868 847 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 TARDBPP1-201ENST00000442013 1203 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 USP40-206ENST00000443711 628 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AP002472.1-201ENST00000577490 586 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AGGF1P10-201ENST00000635005 2191 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AC015819.3-201ENST00000624305 2674 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 BX324167.2-201ENST00000623717 3316 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 LINC00567-201ENST00000569854 3409 ntBASIC10.97□□□□□ -0.65
HLA-DQA1P01909 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
HLA-DQA1P01909 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 FTO-214ENST00000636218 2227 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 AC060814.4-201ENST00000594169 2163 ntBASIC10.96□□□□□ -0.65
HLA-DQA1P01909 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 AL157414.3-201ENST00000624276 1954 ntBASIC10.96□□□□□ -0.65
HLA-DQA1P01909 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
HLA-DQA1P01909 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms