Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.07□□□□□ -0.16
CLDN9O95484 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.07□□□□□ -0.16
CLDN9O95484 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 AL157996.1-201ENST00000624684 2299 ntBASIC14.06□□□□□ -0.16
CLDN9O95484 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.06□□□□□ -0.16
CLDN9O95484 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 AC079316.1-201ENST00000548397 411 ntBASIC14.06□□□□□ -0.16
CLDN9O95484 CR383656.12-201ENST00000549567 513 ntBASIC14.06□□□□□ -0.16
CLDN9O95484 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.06□□□□□ -0.16
CLDN9O95484 AC105233.6-201ENST00000642093 218 ntBASIC14.06□□□□□ -0.16
CLDN9O95484 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CLDN9O95484 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CLDN9O95484 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLDN9O95484 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 PDIA3P1-201ENST00000471856 1510 ntBASIC14.05□□□□□ -0.16
CLDN9O95484 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.05□□□□□ -0.16
CLDN9O95484 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.05□□□□□ -0.16
CLDN9O95484 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 HIST2H2BB-201ENST00000449108 381 ntBASIC14.05□□□□□ -0.16
CLDN9O95484 CROCCP4-201ENST00000457096 498 ntBASIC14.05□□□□□ -0.16
CLDN9O95484 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.05□□□□□ -0.16
CLDN9O95484 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.05□□□□□ -0.16
CLDN9O95484 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 AC023310.1-201ENST00000554836 735 ntBASIC14.05□□□□□ -0.16
CLDN9O95484 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.05□□□□□ -0.16
CLDN9O95484 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLDN9O95484 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.05□□□□□ -0.16
CLDN9O95484 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms