Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC17.81■□□□□ 0.44
CACNA1FO60840 NUDT4P2-201ENST00000578341 546 ntBASIC17.81■□□□□ 0.44
CACNA1FO60840 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.81■□□□□ 0.44
CACNA1FO60840 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.81■□□□□ 0.44
CACNA1FO60840 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.81■□□□□ 0.44
CACNA1FO60840 AC090340.1-201ENST00000620778 4980 ntBASIC17.81■□□□□ 0.44
CACNA1FO60840 AL928921.2-201ENST00000641325 2442 ntBASIC17.81■□□□□ 0.44
CACNA1FO60840 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CACNA1FO60840 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1FO60840 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CACNA1FO60840 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1FO60840 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17.81■□□□□ 0.44
CACNA1FO60840 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 AL009178.2-201ENST00000597278 2719 ntBASIC17.81■□□□□ 0.44
CACNA1FO60840 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CACNA1FO60840 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1FO60840 NRADDP-202ENST00000641269 1585 ntBASIC17.81■□□□□ 0.44
CACNA1FO60840 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC17.8■□□□□ 0.44
CACNA1FO60840 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.8■□□□□ 0.44
CACNA1FO60840 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 AL805961.1-201ENST00000642026 753 ntBASIC17.8■□□□□ 0.44
CACNA1FO60840 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 AC006480.2-201ENST00000609770 1337 ntBASIC17.8■□□□□ 0.44
CACNA1FO60840 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 CROT-203ENST00000419147 2959 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 AC041040.2-201ENST00000622926 2899 ntBASIC17.8■□□□□ 0.44
CACNA1FO60840 RN7SKP109-201ENST00000410592 316 ntBASIC17.8■□□□□ 0.44
CACNA1FO60840 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC17.8■□□□□ 0.44
CACNA1FO60840 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CACNA1FO60840 AC073911.3-201ENST00000624401 631 ntBASIC17.8■□□□□ 0.44
CACNA1FO60840 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC17.8■□□□□ 0.44
CACNA1FO60840 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1FO60840 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CACNA1FO60840 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1FO60840 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.79■□□□□ 0.44
CACNA1FO60840 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CACNA1FO60840 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CACNA1FO60840 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 HERC2P11-201ENST00000562845 725 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 AC100756.2-201ENST00000569537 736 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.79■□□□□ 0.44
CACNA1FO60840 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 COX6A1P2-201ENST00000620597 330 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 AF013593.1-201ENST00000458074 1487 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CACNA1FO60840 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms