Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FP236241.2-201ENST00000624906 1185 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 AL356585.2-201ENST00000625078 2396 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 AC015688.4-201ENST00000580780 1647 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 AL157996.1-201ENST00000624684 2299 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 AGAP10P-201ENST00000454844 2418 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 MIR661-201ENST00000384842 89 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.43□□□□□ -0.42
SDCBPO00560 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.43□□□□□ -0.42
SDCBPO00560 TERF1P3-201ENST00000505638 1227 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 AC026434.2-201ENST00000506094 1078 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC12.43□□□□□ -0.42
SDCBPO00560 AC092364.2-202ENST00000597012 1073 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 AC090643.2-201ENST00000623442 2029 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 Z82170.1-201ENST00000625081 3192 ntBASIC12.43□□□□□ -0.42
SDCBPO00560 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.43□□□□□ -0.42
SDCBPO00560 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
SDCBPO00560 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SDCBPO00560 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 AC015909.5-201ENST00000624336 2266 ntBASIC12.42□□□□□ -0.42
SDCBPO00560 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SDCBPO00560 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.42□□□□□ -0.42
SDCBPO00560 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SDCBPO00560 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms