Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
RETREG3Q86VR2 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
RETREG3Q86VR2 AC087393.1-201ENST00000582896 145 ntBASIC21.64■■□□□ 1.05
RETREG3Q86VR2 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RETREG3Q86VR2 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RETREG3Q86VR2 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
RETREG3Q86VR2 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
RETREG3Q86VR2 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 ECEL1P1-201ENST00000373592 1742 ntBASIC21.63■■□□□ 1.05
RETREG3Q86VR2 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RETREG3Q86VR2 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 AL022069.1-201ENST00000568025 1636 ntBASIC21.62■■□□□ 1.05
RETREG3Q86VR2 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 AL592293.1-201ENST00000502889 1188 ntBASIC21.62■■□□□ 1.05
RETREG3Q86VR2 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 AC018755.3-202ENST00000596210 929 ntBASIC21.62■■□□□ 1.05
RETREG3Q86VR2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RETREG3Q86VR2 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 MIR4449-201ENST00000578365 66 ntBASIC21.61■■□□□ 1.05
RETREG3Q86VR2 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RETREG3Q86VR2 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 AC131274.2-201ENST00000580697 1507 ntBASIC21.6■■□□□ 1.05
RETREG3Q86VR2 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RETREG3Q86VR2 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
RETREG3Q86VR2 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
RETREG3Q86VR2 ALDH1A3-203ENST00000557963 1670 ntBASIC21.58■■□□□ 1.05
RETREG3Q86VR2 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RETREG3Q86VR2 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.58■■□□□ 1.04
RETREG3Q86VR2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RETREG3Q86VR2 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RETREG3Q86VR2 AC127496.7-201ENST00000625110 1798 ntBASIC21.56■■□□□ 1.04
RETREG3Q86VR2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms