Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 NOP2-218ENST00000545200 2751 ntTSL 1 (best) BASIC9.28□□□□□ -0.922e-6■■■■□ 23.2
LSM11P83369 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.952e-6■■■■□ 23.2
LSM11P83369 NOP2-202ENST00000382421 2736 ntTSL 1 (best) BASIC9.08□□□□□ -0.962e-6■■■■□ 23.2
LSM11P83369 PTPRA-204ENST00000380393 3636 ntTSL 1 (best) BASIC8.67□□□□□ -1.022e-6■■■■□ 23.2
LSM11P83369 HDAC6-207ENST00000430858 618 ntTSL 38.53□□□□□ -1.042e-8■■■■□ 23.2
LSM11P83369 MACROD1-203ENST00000538595 868 ntTSL 321.21■□□□□ 0.992e-6■■■■□ 23.2
LSM11P83369 MAFG-203ENST00000574686 570 ntTSL 519.39■□□□□ 0.692e-6■■■■□ 23.2
LSM11P83369 NUBP2-205ENST00000564227 903 ntTSL 319.39■□□□□ 0.692e-6■■■■□ 23.2
LSM11P83369 NUBP2-211ENST00000567700 2196 ntTSL 219.06■□□□□ 0.642e-6■■■■□ 23.2
LSM11P83369 NUBP2-209ENST00000566090 708 ntTSL 218.86■□□□□ 0.612e-6■■■■□ 23.2
LSM11P83369 NUBP2-204ENST00000563821 2235 nt17.95■□□□□ 0.462e-6■■■■□ 23.2
LSM11P83369 NUBP2-215ENST00000568834 1173 ntTSL 217.6■□□□□ 0.412e-6■■■■□ 23.2
LSM11P83369 NUBP2-210ENST00000566447 511 ntTSL 417.6■□□□□ 0.412e-6■■■■□ 23.2
LSM11P83369 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.322e-6■■■■□ 23.2
LSM11P83369 NUBP2-207ENST00000565603 995 ntTSL 316.99■□□□□ 0.312e-6■■■■□ 23.2
LSM11P83369 NUBP2-212ENST00000568287 839 ntTSL 516.96■□□□□ 0.312e-6■■■■□ 23.2
LSM11P83369 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.94■□□□□ 0.32e-6■■■■□ 23.2
LSM11P83369 NUBP2-202ENST00000562263 811 ntTSL 315.86■□□□□ 0.132e-6■■■■□ 23.2
LSM11P83369 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.27■□□□□ 0.032e-6■■■■□ 23.2
LSM11P83369 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.21■□□□□ 0.032e-6■■■■□ 23.2
LSM11P83369 NUBP2-216ENST00000569898 582 ntTSL 315.17■□□□□ 0.022e-6■■■■□ 23.2
LSM11P83369 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.02■□□□□ -02e-6■■■■□ 23.2
LSM11P83369 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.96□□□□□ -0.012e-6■■■■□ 23.2
LSM11P83369 SLC38A10-206ENST00000540966 896 ntTSL 314.63□□□□□ -0.072e-6■■■■□ 23.2
LSM11P83369 WDR1-206ENST00000502962 1411 ntTSL 514.33□□□□□ -0.112e-6■■■■□ 23.2
LSM11P83369 WDR1-215ENST00000510848 554 ntTSL 414.26□□□□□ -0.132e-6■■■■□ 23.2
LSM11P83369 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.142e-6■■■■□ 23.2
LSM11P83369 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.142e-6■■■■□ 23.2
LSM11P83369 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.172e-6■■■■□ 23.2
LSM11P83369 SLC38A10-211ENST00000576151 774 ntTSL 213.68□□□□□ -0.222e-6■■■■□ 23.2
LSM11P83369 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.6□□□□□ -0.232e-6■■■■□ 23.2
LSM11P83369 WDR1-207ENST00000504739 555 ntTSL 313.52□□□□□ -0.252e-6■■■■□ 23.2
LSM11P83369 WDR1-210ENST00000506246 572 ntTSL 513.52□□□□□ -0.252e-6■■■■□ 23.2
LSM11P83369 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.292e-6■■■■□ 23.2
LSM11P83369 NUBP2-203ENST00000563136 470 ntTSL 412.93□□□□□ -0.342e-6■■■■□ 23.2
LSM11P83369 WDR1-214ENST00000509695 467 ntTSL 412.88□□□□□ -0.352e-6■■■■□ 23.2
LSM11P83369 WDR1-212ENST00000508949 552 ntTSL 412.8□□□□□ -0.362e-6■■■■□ 23.2
LSM11P83369 NUBP2-213ENST00000568610 1480 ntTSL 512.79□□□□□ -0.362e-6■■■■□ 23.2
LSM11P83369 WDR1-208ENST00000505543 687 ntTSL 412.02□□□□□ -0.492e-6■■■■□ 23.2
LSM11P83369 WDR1-218ENST00000515743 4482 ntTSL 511.47□□□□□ -0.572e-6■■■■□ 23.2
LSM11P83369 CDC45-208ENST00000471470 857 ntTSL 511.37□□□□□ -0.592e-6■■■■□ 23.2
LSM11P83369 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.592e-6■■■■□ 23.2
LSM11P83369 WDR1-211ENST00000508079 812 ntTSL 311.32□□□□□ -0.62e-6■■■■□ 23.2
LSM11P83369 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.642e-6■■■■□ 23.2
LSM11P83369 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC10.32□□□□□ -0.762e-6■■■■□ 23.2
LSM11P83369 OSGEP-202ENST00000553292 530 ntTSL 28.33□□□□□ -1.082e-6■■■■□ 23.2
LSM11P83369 WASL-201ENST00000223023 4435 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.584e-16■■■■□ 23.2
LSM11P83369 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.669e-10■■■■□ 23.1
LSM11P83369 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.089e-10■■■■□ 23.1
LSM11P83369 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.439e-10■■■■□ 23.1
LSM11P83369 SLC19A1-206ENST00000460174 600 ntTSL 312.34□□□□□ -0.433e-7■■■■□ 23.1
LSM11P83369 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.58e-6■■■■□ 23.1
LSM11P83369 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.238e-6■■■■□ 23.1
LSM11P83369 ROGDI-209ENST00000587843 1362 ntTSL 221.59■■□□□ 1.054e-7■■■■□ 23
LSM11P83369 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.94e-7■■■■□ 23
LSM11P83369 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.474e-7■■■■□ 23
LSM11P83369 ROGDI-213ENST00000591292 2684 ntTSL 217.32■□□□□ 0.364e-7■■■■□ 23
LSM11P83369 ROGDI-207ENST00000587377 1394 ntTSL 516.59■□□□□ 0.254e-7■■■■□ 23
LSM11P83369 SLC22A18-207ENST00000463571 1030 ntTSL 516.31■□□□□ 0.24e-7■■■■□ 23
LSM11P83369 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.2■□□□□ 0.024e-7■■■■□ 23
LSM11P83369 SLC22A18-205ENST00000449603 682 ntTSL 315.05■□□□□ -04e-7■■■■□ 23
LSM11P83369 SLC22A18-204ENST00000441077 831 ntTSL 513.06□□□□□ -0.324e-7■■■■□ 23
LSM11P83369 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC9.82□□□□□ -0.849e-10■■■■□ 23
LSM11P83369 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.591e-6■■■■□ 23
LSM11P83369 KIAA0895L-205ENST00000563831 836 ntTSL 412.65□□□□□ -0.381e-6■■■■□ 23
LSM11P83369 SUN1-222ENST00000457861 2975 ntTSL 215.31■□□□□ 0.042e-6■■■■□ 23
LSM11P83369 GATA2-205ENST00000492608 844 ntTSL 316.7■□□□□ 0.263e-7■■■■□ 22.9
LSM11P83369 GATA2-206ENST00000498200 563 ntTSL 216.18■□□□□ 0.183e-7■■■■□ 22.9
LSM11P83369 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.363e-7■■■■□ 22.9
LSM11P83369 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.66■□□□□ 0.742e-6■■■■□ 22.9
LSM11P83369 PCGF3-204ENST00000427463 582 ntTSL 318.22■□□□□ 0.512e-6■■■■□ 22.9
LSM11P83369 PCGF3-210ENST00000482726 538 ntTSL 418.22■□□□□ 0.512e-6■■■■□ 22.9
LSM11P83369 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.372e-6■■■■□ 22.9
LSM11P83369 PCGF3-205ENST00000430644 2621 ntTSL 216.52■□□□□ 0.232e-6■■■■□ 22.9
LSM11P83369 PCGF3-209ENST00000475288 604 ntTSL 315.63■□□□□ 0.092e-6■■■■□ 22.9
LSM11P83369 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -09e-7■■■■□ 22.9
LSM11P83369 PCGF3-203ENST00000419774 589 ntTSL 514.82□□□□□ -0.042e-6■■■■□ 22.9
LSM11P83369 PCGF3-211ENST00000484141 566 ntTSL 214.46□□□□□ -0.092e-6■■■■□ 22.9
LSM11P83369 PCGF3-207ENST00000440452 3609 ntTSL 211.73□□□□□ -0.532e-6■■■■□ 22.9
LSM11P83369 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.024e-6■■■■□ 22.8
LSM11P83369 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.84e-6■■■■□ 22.8
LSM11P83369 ARHGEF10L-209ENST00000495593 2261 ntTSL 214.94□□□□□ -0.023e-10■■■■□ 22.8
LSM11P83369 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.98■□□□□ 0.318e-8■■■■□ 22.8
LSM11P83369 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.28e-8■■■■□ 22.8
LSM11P83369 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.158e-8■■■■□ 22.8
LSM11P83369 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)13.37□□□□□ -0.278e-8■■■■□ 22.8
LSM11P83369 STXBP2-217ENST00000599737 1523 ntTSL 513.13□□□□□ -0.318e-8■■■■□ 22.8
LSM11P83369 STXBP2-214ENST00000599400 811 ntTSL 512.55□□□□□ -0.48e-8■■■■□ 22.8
LSM11P83369 STXBP2-219ENST00000600702 770 ntTSL 211.3□□□□□ -0.68e-8■■■■□ 22.8
LSM11P83369 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.21e-6■■■■□ 22.8
LSM11P83369 UBE2D2-208ENST00000511725 656 ntTSL 2 BASIC12.06□□□□□ -0.489e-9■■■■□ 22.7
LSM11P83369 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.165e-7■■■■□ 22.7
LSM11P83369 COL9A2-207ENST00000482722 2887 ntTSL 1 (best)13.49□□□□□ -0.255e-7■■■■□ 22.7
LSM11P83369 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.063e-7■■■■□ 22.7
LSM11P83369 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.55■□□□□ 0.723e-7■■■■□ 22.7
LSM11P83369 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.14■□□□□ 0.173e-7■■■■□ 22.7
LSM11P83369 ATAD3A-201ENST00000339113 2330 ntTSL 215.96■□□□□ 0.153e-7■■■■□ 22.7
LSM11P83369 SNHG9-202ENST00000564014 471 ntBASIC14.57□□□□□ -0.083e-6■■■■□ 22.7
LSM11P83369 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.9□□□□□ -0.343e-6■■■■□ 22.7
LSM11P83369 PILRA-204ENST00000432297 664 ntAPPRIS ALT2 TSL 57.99□□□□□ -1.133e-22■■■■□ 22.7
Retrieved 100 of 11,495 protein–RNA pairs in 58.4 ms