Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDH11P55287 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDH11P55287 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.66■□□□□ 0.9
CDH11P55287 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CDH11P55287 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.66■□□□□ 0.9
CDH11P55287 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CDH11P55287 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH11P55287 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CDH11P55287 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CDH11P55287 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH11P55287 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.65■□□□□ 0.9
CDH11P55287 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH11P55287 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CDH11P55287 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.64■□□□□ 0.9
CDH11P55287 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CDH11P55287 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CDH11P55287 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CDH11P55287 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH11P55287 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH11P55287 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH11P55287 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH11P55287 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.64■□□□□ 0.89
CDH11P55287 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH11P55287 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH11P55287 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH11P55287 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH11P55287 ANOS2P-203ENST00000472227 1816 ntBASIC20.64■□□□□ 0.89
CDH11P55287 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH11P55287 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDH11P55287 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH11P55287 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH11P55287 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH11P55287 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CDH11P55287 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH11P55287 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH11P55287 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDH11P55287 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.61■□□□□ 0.89
CDH11P55287 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.61■□□□□ 0.89
CDH11P55287 AC022616.5-201ENST00000518796 181 ntBASIC20.61■□□□□ 0.89
CDH11P55287 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 AC233723.2-201ENST00000623798 2106 ntBASIC20.61■□□□□ 0.89
CDH11P55287 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH11P55287 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH11P55287 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CDH11P55287 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH11P55287 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.6■□□□□ 0.89
CDH11P55287 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH11P55287 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CDH11P55287 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CDH11P55287 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH11P55287 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.6■□□□□ 0.89
CDH11P55287 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.6■□□□□ 0.89
CDH11P55287 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH11P55287 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.6■□□□□ 0.89
CDH11P55287 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.6■□□□□ 0.89
CDH11P55287 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH11P55287 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH11P55287 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH11P55287 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH11P55287 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH11P55287 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms