Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX2P48431 AL592293.1-201ENST00000502889 1188 ntBASIC19.89■□□□□ 0.77
SOX2P48431 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.89■□□□□ 0.77
SOX2P48431 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.89■□□□□ 0.77
SOX2P48431 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.89■□□□□ 0.77
SOX2P48431 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SOX2P48431 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.89■□□□□ 0.77
SOX2P48431 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.88■□□□□ 0.77
SOX2P48431 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
SOX2P48431 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SOX2P48431 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 AL161729.1-201ENST00000604104 1402 ntBASIC19.88■□□□□ 0.77
SOX2P48431 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SOX2P48431 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SOX2P48431 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
SOX2P48431 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX2P48431 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SOX2P48431 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SOX2P48431 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SOX2P48431 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SOX2P48431 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.87■□□□□ 0.77
SOX2P48431 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SOX2P48431 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.87■□□□□ 0.77
SOX2P48431 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX2P48431 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.86■□□□□ 0.77
SOX2P48431 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.86■□□□□ 0.77
SOX2P48431 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
SOX2P48431 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.86■□□□□ 0.77
SOX2P48431 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.86■□□□□ 0.77
SOX2P48431 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
SOX2P48431 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SOX2P48431 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.85■□□□□ 0.77
SOX2P48431 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.85■□□□□ 0.77
SOX2P48431 AC087393.1-201ENST00000582896 145 ntBASIC19.85■□□□□ 0.77
SOX2P48431 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX2P48431 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.85■□□□□ 0.77
SOX2P48431 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SOX2P48431 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX2P48431 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 AL022069.1-201ENST00000568025 1636 ntBASIC19.84■□□□□ 0.77
SOX2P48431 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SOX2P48431 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX2P48431 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX2P48431 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX2P48431 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX2P48431 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SOX2P48431 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX2P48431 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX2P48431 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX2P48431 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.83■□□□□ 0.77
SOX2P48431 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SOX2P48431 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX2P48431 LINC00565-201ENST00000562710 2331 ntBASIC19.82■□□□□ 0.76
SOX2P48431 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 RNF126P1-201ENST00000567452 1320 ntBASIC19.82■□□□□ 0.76
SOX2P48431 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SOX2P48431 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 MIR6765-201ENST00000614092 87 ntBASIC19.82■□□□□ 0.76
SOX2P48431 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms