Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.01■□□□□ 0.95
NKX2-2O95096 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-2O95096 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NKX2-2O95096 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-2O95096 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-2O95096 ANOS2P-203ENST00000472227 1816 ntBASIC21■□□□□ 0.95
NKX2-2O95096 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-2O95096 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-2O95096 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-2O95096 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-2O95096 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-2O95096 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-2O95096 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NKX2-2O95096 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-2O95096 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NKX2-2O95096 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-2O95096 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-2O95096 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-2O95096 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-2O95096 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
NKX2-2O95096 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.99■□□□□ 0.95
NKX2-2O95096 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NKX2-2O95096 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-2O95096 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-2O95096 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-2O95096 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-2O95096 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-2O95096 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-2O95096 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-2O95096 DUSP8P5-201ENST00000422884 1815 ntBASIC20.98■□□□□ 0.95
NKX2-2O95096 AC005703.6-201ENST00000623265 1329 ntBASIC20.98■□□□□ 0.95
NKX2-2O95096 AC092068.2-201ENST00000590491 1708 ntBASIC20.98■□□□□ 0.95
NKX2-2O95096 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
NKX2-2O95096 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-2O95096 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-2O95096 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-2O95096 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-2O95096 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.97■□□□□ 0.95
NKX2-2O95096 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-2O95096 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-2O95096 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.97■□□□□ 0.95
NKX2-2O95096 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-2O95096 MTDHP2-201ENST00000601468 714 ntBASIC20.97■□□□□ 0.95
NKX2-2O95096 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-2O95096 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.97■□□□□ 0.95
NKX2-2O95096 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-2O95096 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.96■□□□□ 0.95
NKX2-2O95096 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
NKX2-2O95096 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-2O95096 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-2O95096 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-2O95096 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-2O95096 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NKX2-2O95096 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.95■□□□□ 0.94
NKX2-2O95096 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 AC010997.5-201ENST00000609182 354 ntBASIC20.95■□□□□ 0.94
NKX2-2O95096 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NKX2-2O95096 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-2O95096 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
NKX2-2O95096 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.95■□□□□ 0.94
NKX2-2O95096 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NKX2-2O95096 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 TSPY9P-201ENST00000440215 945 ntBASIC20.94■□□□□ 0.94
NKX2-2O95096 TSPY11P-201ENST00000442607 1045 ntBASIC20.94■□□□□ 0.94
NKX2-2O95096 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.94■□□□□ 0.94
NKX2-2O95096 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.94■□□□□ 0.94
NKX2-2O95096 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-2O95096 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.93■□□□□ 0.94
NKX2-2O95096 UNC93B8-201ENST00000511903 705 ntBASIC20.93■□□□□ 0.94
NKX2-2O95096 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.93■□□□□ 0.94
NKX2-2O95096 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-2O95096 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms