Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
PTCD1O75127 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
PTCD1O75127 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
PTCD1O75127 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
PTCD1O75127 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
PTCD1O75127 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC29.38■■■□□ 2.29
PTCD1O75127 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC29.38■■■□□ 2.29
PTCD1O75127 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
PTCD1O75127 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
PTCD1O75127 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC29.38■■■□□ 2.29
PTCD1O75127 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC29.38■■■□□ 2.29
PTCD1O75127 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
PTCD1O75127 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PTCD1O75127 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PTCD1O75127 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PTCD1O75127 BX842568.3-201ENST00000418104 571 ntBASIC29.37■■■□□ 2.29
PTCD1O75127 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC29.37■■■□□ 2.29
PTCD1O75127 CD37-213ENST00000598095 1598 ntTSL 2 BASIC29.37■■■□□ 2.29
PTCD1O75127 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC29.37■■■□□ 2.29
PTCD1O75127 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PTCD1O75127 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
PTCD1O75127 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.36■■■□□ 2.29
PTCD1O75127 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.36■■■□□ 2.29
PTCD1O75127 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
PTCD1O75127 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
PTCD1O75127 SP2-202ENST00000613139 908 ntTSL 5 BASIC29.35■■■□□ 2.29
PTCD1O75127 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
PTCD1O75127 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC29.35■■■□□ 2.29
PTCD1O75127 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
PTCD1O75127 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.34■■■□□ 2.29
PTCD1O75127 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.34■■■□□ 2.29
PTCD1O75127 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
PTCD1O75127 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
PTCD1O75127 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
PTCD1O75127 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.33■■■□□ 2.29
PTCD1O75127 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PTCD1O75127 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
PTCD1O75127 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PTCD1O75127 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
PTCD1O75127 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
PTCD1O75127 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.32■■■□□ 2.28
PTCD1O75127 pRNA.6-201ENST00000610482 90 ntBASIC29.32■■■□□ 2.28
PTCD1O75127 pRNA.5-201ENST00000612139 90 ntBASIC29.32■■■□□ 2.28
PTCD1O75127 pRNA.11-201ENST00000618423 90 ntBASIC29.32■■■□□ 2.28
PTCD1O75127 pRNA.13-201ENST00000619112 90 ntBASIC29.32■■■□□ 2.28
PTCD1O75127 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
PTCD1O75127 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.31■■■□□ 2.28
PTCD1O75127 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.31■■■□□ 2.28
PTCD1O75127 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC29.31■■■□□ 2.28
PTCD1O75127 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
PTCD1O75127 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
PTCD1O75127 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
PTCD1O75127 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC29.31■■■□□ 2.28
PTCD1O75127 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PTCD1O75127 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.3■■■□□ 2.28
PTCD1O75127 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
PTCD1O75127 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
PTCD1O75127 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
PTCD1O75127 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
PTCD1O75127 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.3■■■□□ 2.28
PTCD1O75127 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC29.3■■■□□ 2.28
PTCD1O75127 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
PTCD1O75127 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
PTCD1O75127 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
PTCD1O75127 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC29.29■■■□□ 2.28
PTCD1O75127 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
PTCD1O75127 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
PTCD1O75127 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
PTCD1O75127 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC29.28■■■□□ 2.28
PTCD1O75127 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.28■■■□□ 2.28
PTCD1O75127 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PTCD1O75127 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
PTCD1O75127 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
PTCD1O75127 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
PTCD1O75127 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.27■■■□□ 2.28
PTCD1O75127 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
PTCD1O75127 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
PTCD1O75127 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.27■■■□□ 2.28
PTCD1O75127 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PTCD1O75127 ALDH1A3-203ENST00000557963 1670 ntBASIC29.26■■■□□ 2.27
PTCD1O75127 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
PTCD1O75127 AC126544.1-201ENST00000580842 1059 ntBASIC29.26■■■□□ 2.27
PTCD1O75127 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
PTCD1O75127 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC29.26■■■□□ 2.27
PTCD1O75127 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.26■■■□□ 2.27
PTCD1O75127 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
PTCD1O75127 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PTCD1O75127 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC29.25■■■□□ 2.27
PTCD1O75127 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
PTCD1O75127 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.25■■■□□ 2.27
PTCD1O75127 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PTCD1O75127 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.25■■■□□ 2.27
PTCD1O75127 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PTCD1O75127 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.24■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms