Protein–RNA interactions for Protein: O43734

TRAF3IP2, Adapter protein CIKS, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2O43734 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAF3IP2O43734 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAF3IP2O43734 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TRAF3IP2O43734 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAF3IP2O43734 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
TRAF3IP2O43734 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.22■□□□□ 0.83
TRAF3IP2O43734 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRAF3IP2O43734 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAF3IP2O43734 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 MTDHP2-201ENST00000601468 714 ntBASIC20.2■□□□□ 0.82
TRAF3IP2O43734 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAF3IP2O43734 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 TSPY9P-201ENST00000440215 945 ntBASIC20.19■□□□□ 0.82
TRAF3IP2O43734 TSPY11P-201ENST00000442607 1045 ntBASIC20.19■□□□□ 0.82
TRAF3IP2O43734 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAF3IP2O43734 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAF3IP2O43734 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 UNC93B8-201ENST00000511903 705 ntBASIC20.17■□□□□ 0.82
TRAF3IP2O43734 AC010997.5-201ENST00000609182 354 ntBASIC20.17■□□□□ 0.82
TRAF3IP2O43734 AC005703.6-201ENST00000623265 1329 ntBASIC20.17■□□□□ 0.82
TRAF3IP2O43734 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TRAF3IP2O43734 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 ANOS2P-203ENST00000472227 1816 ntBASIC20.16■□□□□ 0.82
TRAF3IP2O43734 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 GUSBP5-201ENST00000418136 578 ntBASIC20.16■□□□□ 0.82
TRAF3IP2O43734 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAF3IP2O43734 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAF3IP2O43734 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAF3IP2O43734 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAF3IP2O43734 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAF3IP2O43734 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAF3IP2O43734 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms