Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.94■□□□□ 0.78
SGCEO43556 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SGCEO43556 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
SGCEO43556 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
SGCEO43556 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SGCEO43556 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.94■□□□□ 0.78
SGCEO43556 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.94■□□□□ 0.78
SGCEO43556 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SGCEO43556 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SGCEO43556 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.94■□□□□ 0.78
SGCEO43556 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SGCEO43556 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.93■□□□□ 0.78
SGCEO43556 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.93■□□□□ 0.78
SGCEO43556 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.93■□□□□ 0.78
SGCEO43556 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.93■□□□□ 0.78
SGCEO43556 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.93■□□□□ 0.78
SGCEO43556 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SGCEO43556 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SGCEO43556 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SGCEO43556 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SGCEO43556 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SGCEO43556 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SGCEO43556 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.91■□□□□ 0.78
SGCEO43556 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.91■□□□□ 0.78
SGCEO43556 SNX5-217ENST00000606557 1087 ntBASIC19.91■□□□□ 0.78
SGCEO43556 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SGCEO43556 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SGCEO43556 AC021242.3-201ENST00000607598 1377 ntBASIC19.91■□□□□ 0.78
SGCEO43556 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SGCEO43556 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SGCEO43556 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.9■□□□□ 0.78
SGCEO43556 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SGCEO43556 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SGCEO43556 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.9■□□□□ 0.78
SGCEO43556 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SGCEO43556 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SGCEO43556 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SGCEO43556 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SGCEO43556 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SGCEO43556 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.89■□□□□ 0.77
SGCEO43556 KRT125P-201ENST00000546827 989 ntBASIC19.89■□□□□ 0.77
SGCEO43556 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SGCEO43556 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.88■□□□□ 0.77
SGCEO43556 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.88■□□□□ 0.77
SGCEO43556 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.88■□□□□ 0.77
SGCEO43556 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.88■□□□□ 0.77
SGCEO43556 Z92544.1-202ENST00000571933 1220 ntBASIC19.88■□□□□ 0.77
SGCEO43556 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.88■□□□□ 0.77
SGCEO43556 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SGCEO43556 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SGCEO43556 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.87■□□□□ 0.77
SGCEO43556 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SGCEO43556 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SGCEO43556 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.87■□□□□ 0.77
SGCEO43556 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.87■□□□□ 0.77
SGCEO43556 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SGCEO43556 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SGCEO43556 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SGCEO43556 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms