Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GMEB2-202ENST00000370069 4011 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PTPRG-201ENST00000295874 4650 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 REXO1L2P-201ENST00000425429 2069 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPS15-201ENST00000233609 534 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPL18P13-201ENST00000478088 569 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPS15-205ENST00000586686 562 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPS15-208ENST00000591804 711 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZIK1-202ENST00000536878 4144 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RAB8B-201ENST00000321437 4943 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PCDHGB6-201ENST00000520790 4599 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LRFN3-204ENST00000588831 3689 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PES1-204ENST00000402284 2144 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AL136309.1-201ENST00000403917 691 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC079178.1-201ENST00000420915 656 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PTK2-225ENST00000520892 571 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 FBXW8-202ENST00000455858 4648 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AL603832.2-201ENST00000566195 2125 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MIR4683-201ENST00000579659 81 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 EPB41L2-232ENST00000628542 4247 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC055811.4-201ENST00000624039 1754 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDKL2-202ENST00000429927 3383 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ILF3-AS1-201ENST00000591501 1983 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms