Protein–RNA interactions for Protein: P56749

CLDN12, Claudin-12, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN12P56749 UPF3AP3-201ENST00000420996 769 ntBASIC12.7□□□□□ -0.38
CLDN12P56749 AC107890.1-201ENST00000422478 521 ntBASIC12.7□□□□□ -0.38
CLDN12P56749 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.7□□□□□ -0.38
CLDN12P56749 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.7□□□□□ -0.38
CLDN12P56749 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.7□□□□□ -0.38
CLDN12P56749 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 AC097493.3-201ENST00000509725 367 ntBASIC12.7□□□□□ -0.38
CLDN12P56749 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.7□□□□□ -0.38
CLDN12P56749 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.7□□□□□ -0.38
CLDN12P56749 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
CLDN12P56749 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12.7□□□□□ -0.38
CLDN12P56749 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC12.7□□□□□ -0.38
CLDN12P56749 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.7□□□□□ -0.38
CLDN12P56749 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLDN12P56749 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 TREML5P-201ENST00000421694 576 ntBASIC12.69□□□□□ -0.38
CLDN12P56749 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.69□□□□□ -0.38
CLDN12P56749 RN7SL399P-201ENST00000471648 279 ntBASIC12.69□□□□□ -0.38
CLDN12P56749 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.69□□□□□ -0.38
CLDN12P56749 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.69□□□□□ -0.38
CLDN12P56749 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.69□□□□□ -0.38
CLDN12P56749 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 RARRES2P5-201ENST00000564013 466 ntBASIC12.69□□□□□ -0.38
CLDN12P56749 AC140878.1-201ENST00000565277 250 ntBASIC12.69□□□□□ -0.38
CLDN12P56749 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
CLDN12P56749 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC12.69□□□□□ -0.38
CLDN12P56749 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.69□□□□□ -0.38
CLDN12P56749 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLDN12P56749 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CLDN12P56749 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
CLDN12P56749 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLDN12P56749 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLDN12P56749 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.68□□□□□ -0.38
CLDN12P56749 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CLDN12P56749 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CLDN12P56749 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.68□□□□□ -0.38
CLDN12P56749 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLDN12P56749 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms