Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 FAM90A7P-201ENST00000382628 1395 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 FAM90A23P-201ENST00000400136 1395 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
NKX2-2O95096 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
NKX2-2O95096 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 XBP1P1-201ENST00000436573 652 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
NKX2-2O95096 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.37□□□□□ -0.27
NKX2-2O95096 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AC104982.3-201ENST00000581995 514 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AC008805.1-201ENST00000590892 364 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX2-2O95096 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
NKX2-2O95096 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 AC005695.3-201ENST00000614522 232 ntBASIC13.37□□□□□ -0.27
NKX2-2O95096 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
NKX2-2O95096 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
NKX2-2O95096 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX2-2O95096 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
NKX2-2O95096 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AC004899.1-201ENST00000424687 1714 ntBASIC13.36□□□□□ -0.27
NKX2-2O95096 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX2-2O95096 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
NKX2-2O95096 OR2R1P-201ENST00000441404 914 ntBASIC13.36□□□□□ -0.27
NKX2-2O95096 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms