Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 AL031595.1-201ENST00000623969 4709 ntBASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC39Q9UFE4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ACTG1P3-201ENST00000431775 1114 ntBASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 PTP4A1P2-201ENST00000546033 454 ntBASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 AGGF1P1-201ENST00000509500 2073 ntBASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC39Q9UFE4 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 TP73-207ENST00000378290 1831 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms