Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 TMEM198B-204ENST00000484016 896 ntBASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 MBLAC2-202ENST00000514906 1936 ntBASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 RPL7P3-201ENST00000441388 714 ntBASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 CR383656.12-201ENST00000549567 513 ntBASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
VPS29Q9UBQ0 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
VPS29Q9UBQ0 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms