Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 TSPY26P-202ENST00000565928 3884 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AL591122.2-201ENST00000624125 1853 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 RPL18AP8-201ENST00000486071 528 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 RN7SL81P-201ENST00000493781 261 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AC005041.3-201ENST00000606287 649 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 MIR7845-201ENST00000618396 99 ntBASIC16.25■□□□□ 0.19
COL20A1Q9P218 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL20A1Q9P218 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.25■□□□□ 0.19
COL20A1Q9P218 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 RPL18AP3-201ENST00000462885 528 ntBASIC16.24■□□□□ 0.19
COL20A1Q9P218 TMCO5B-205ENST00000530020 894 ntBASIC16.24■□□□□ 0.19
COL20A1Q9P218 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 AL021707.6-201ENST00000609212 491 ntBASIC16.24■□□□□ 0.19
COL20A1Q9P218 RN7SL736P-201ENST00000613111 269 ntBASIC16.24■□□□□ 0.19
COL20A1Q9P218 AC005618.3-201ENST00000624928 458 ntBASIC16.24■□□□□ 0.19
COL20A1Q9P218 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.24■□□□□ 0.19
COL20A1Q9P218 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL20A1Q9P218 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 219.7 ms