Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 AC012508.2-201ENST00000567613 1472 ntBASIC10.32□□□□□ -0.76
CKS1BP61024 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 CICP1-201ENST00000416803 2410 ntBASIC10.32□□□□□ -0.76
CKS1BP61024 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 ARHGEF10-203ENST00000398560 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
CKS1BP61024 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC10.32□□□□□ -0.76
CKS1BP61024 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC10.32□□□□□ -0.76
CKS1BP61024 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC10.32□□□□□ -0.76
CKS1BP61024 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC10.32□□□□□ -0.76
CKS1BP61024 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC10.32□□□□□ -0.76
CKS1BP61024 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC10.32□□□□□ -0.76
CKS1BP61024 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC10.32□□□□□ -0.76
CKS1BP61024 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC10.32□□□□□ -0.76
CKS1BP61024 TMEM220-201ENST00000341871 3106 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 PAX5-201ENST00000358127 8615 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 CCAR2-206ENST00000520861 3560 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 GRN-214ENST00000589265 1632 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC10.32□□□□□ -0.76
CKS1BP61024 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 GALNT6-202ENST00000543196 5207 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 AL022323.5-201ENST00000624101 2059 ntBASIC10.32□□□□□ -0.76
CKS1BP61024 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
CKS1BP61024 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC10.32□□□□□ -0.76
CKS1BP61024 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 AC073335.2-201ENST00000610177 3441 ntBASIC10.32□□□□□ -0.76
CKS1BP61024 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 TMPRSS7-201ENST00000419127 2317 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 COL12A1-202ENST00000345356 5886 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CKS1BP61024 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 FAM90A11P-201ENST00000518378 2218 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 DNAJB5-204ENST00000454002 2818 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 DCAF4-213ENST00000555042 2374 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 AL355388.2-201ENST00000610146 2157 ntTSL 4 BASIC10.31□□□□□ -0.76
CKS1BP61024 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
CKS1BP61024 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 AL590627.1-203ENST00000421194 1026 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 GHSR-202ENST00000427970 912 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC10.31□□□□□ -0.76
CKS1BP61024 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 SLC25A39P2-201ENST00000537614 270 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 INO80E-210ENST00000567705 880 ntTSL 3 BASIC10.31□□□□□ -0.76
CKS1BP61024 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC10.31□□□□□ -0.76
CKS1BP61024 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 FAM197Y3-203ENST00000618346 717 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 AC092902.6-201ENST00000641783 218 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 ERBB2-201ENST00000269571 4545 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 WASF3-201ENST00000335327 4790 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 AL583810.2-201ENST00000556430 3254 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms