RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 DCAF8L2P0C7V8 631 aa19.64■□□□□ 0.74
COL12A1-202ENST00000345356 SUPT5HO00267 1087 aaKnown RBP19.58■□□□□ 0.73
COL12A1-202ENST00000345356 PELP1Q8IZL8 1130 aaKnown RBP19.54■□□□□ 0.72
COL12A1-202ENST00000345356 MYT1Q01538 1121 aa19.3■□□□□ 0.68
COL12A1-202ENST00000345356 PCGF6Q9BYE7 350 aa19.18■□□□□ 0.66
COL12A1-202ENST00000345356 SHROOM4Q9ULL8 1493 aa19.01■□□□□ 0.63
COL12A1-202ENST00000345356 CENPBP07199 599 aaPredicted RBP18.99■□□□□ 0.63
COL12A1-202ENST00000345356 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
COL12A1-202ENST00000345356 NISCHQ9Y2I1 1504 aa18.84■□□□□ 0.61
COL12A1-202ENST00000345356 ZEB1P37275 1124 aaPredicted RBP18.81■□□□□ 0.6
COL12A1-202ENST00000345356 ERICH6Q7L0X2 663 aa18.76■□□□□ 0.59
COL12A1-202ENST00000345356 HRCP23327 699 aa18.63■□□□□ 0.57
COL12A1-202ENST00000345356 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
COL12A1-202ENST00000345356 YTHDC1Q96MU7 727 aaKnown RBP18.49■□□□□ 0.55
COL12A1-202ENST00000345356 TTBK1Q5TCY1 1321 aaPredicted RBP18.46■□□□□ 0.55
COL12A1-202ENST00000345356 FAM9AQ8IZU1 332 aaPredicted RBP18.46■□□□□ 0.55
COL12A1-202ENST00000345356 APLP2Q06481 763 aa18.4■□□□□ 0.54
COL12A1-202ENST00000345356 PPARGC1BQ86YN6 1023 aaKnown RBP18.27■□□□□ 0.52
COL12A1-202ENST00000345356 NEFLP07196 543 aa18.26■□□□□ 0.51
COL12A1-202ENST00000345356 TRIM26Q12899 539 aaPredicted RBP18.2■□□□□ 0.5
COL12A1-202ENST00000345356 TRIM41Q8WV44 630 aa18.02■□□□□ 0.48
COL12A1-202ENST00000345356 GTF3C3Q9Y5Q9 886 aa17.87■□□□□ 0.45
COL12A1-202ENST00000345356 RANGAP1P46060 587 aaPredicted RBP17.81■□□□□ 0.44
COL12A1-202ENST00000345356 DIEXFQ68CQ4 756 aaKnown RBP17.81■□□□□ 0.44
COL12A1-202ENST00000345356 LOC105371045A0A1W2PR82 267 aa17.76■□□□□ 0.43
COL12A1-202ENST00000345356 UBTFP17480 764 aaKnown RBP17.7■□□□□ 0.42
COL12A1-202ENST00000345356 CHIC1Q5VXU3 224 aa17.69■□□□□ 0.42
COL12A1-202ENST00000345356 RTL5Q5HYW3 569 aaPredicted RBP17.64■□□□□ 0.41
COL12A1-202ENST00000345356 DAXXQ9UER7 740 aaPredicted RBP17.64■□□□□ 0.41
COL12A1-202ENST00000345356 ACIN1Q9UKV3 1341 aaKnown RBP17.63■□□□□ 0.41
COL12A1-202ENST00000345356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.62■□□□□ 0.41
COL12A1-202ENST00000345356 BCANQ96GW7 911 aa17.49■□□□□ 0.39
COL12A1-202ENST00000345356 ATP1B4Q9UN42 357 aaPredicted RBP17.48■□□□□ 0.39
COL12A1-202ENST00000345356 HNRNPUL2Q1KMD3 747 aaKnown RBP17.45■□□□□ 0.38
COL12A1-202ENST00000345356 SCAF1Q9H7N4 1312 aaKnown RBP17.36■□□□□ 0.37
COL12A1-202ENST00000345356 ITGAEP38570 1179 aa17.31■□□□□ 0.36
COL12A1-202ENST00000345356 ZNF316A6NFI3 1004 aaPredicted RBP17.3■□□□□ 0.36
COL12A1-202ENST00000345356 CDK11AQ9UQ88 783 aaPredicted RBP17.29■□□□□ 0.36
COL12A1-202ENST00000345356 NEUROD1Q13562 356 aa17.22■□□□□ 0.35
COL12A1-202ENST00000345356 POLR3GLQ9BT43 218 aa17.21■□□□□ 0.35
COL12A1-202ENST00000345356 CNGB1Q14028 1251 aaPredicted RBP17.19■□□□□ 0.34
COL12A1-202ENST00000345356 EIF5BO60841 1220 aaKnown RBP17.13■□□□□ 0.33
COL12A1-202ENST00000345356 CLSPNQ9HAW4 1339 aa17.08■□□□□ 0.32
COL12A1-202ENST00000345356 ANP32CO43423 234 aa17.01■□□□□ 0.31
COL12A1-202ENST00000345356 ANP32AP39687 249 aaKnown RBP16.99■□□□□ 0.31
COL12A1-202ENST00000345356 MYT1LQ9UL68 1186 aa16.99■□□□□ 0.31
COL12A1-202ENST00000345356 FKBP8Q14318 412 aa16.98■□□□□ 0.31
COL12A1-202ENST00000345356 ANP32EQ9BTT0 268 aa16.9■□□□□ 0.3
COL12A1-202ENST00000345356 GLIPR1L2Q4G1C9 344 aa16.89■□□□□ 0.29
COL12A1-202ENST00000345356 DCAF1Q9Y4B6 1507 aa16.85■□□□□ 0.29
COL12A1-202ENST00000345356 NPM2Q86SE8 214 aaKnown RBP16.85■□□□□ 0.29
COL12A1-202ENST00000345356 NBR1Q14596 966 aa16.85■□□□□ 0.29
COL12A1-202ENST00000345356 BCL11AQ9H165 835 aa16.79■□□□□ 0.28
COL12A1-202ENST00000345356 FAM50AQ14320 339 aaKnown RBP16.75■□□□□ 0.27
COL12A1-202ENST00000345356 MIER1Q8N108 512 aa16.73■□□□□ 0.27
COL12A1-202ENST00000345356 ZBTB47Q9UFB7 747 aaPredicted RBP16.68■□□□□ 0.26
COL12A1-202ENST00000345356 HNRNPUQ00839 825 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL12A1-202ENST00000345356 TRIM52Q96A61 297 aa16.62■□□□□ 0.25
COL12A1-202ENST00000345356 DDX10Q13206 875 aaKnown RBP16.56■□□□□ 0.24
COL12A1-202ENST00000345356 SLC4A1APQ9BWU0 796 aaKnown RBP16.55■□□□□ 0.24
COL12A1-202ENST00000345356 ANP32BQ92688 251 aaKnown RBP16.52■□□□□ 0.24
COL12A1-202ENST00000345356 IRX6P78412 446 aaPredicted RBP16.51■□□□□ 0.23
COL12A1-202ENST00000345356 CCDC136Q96JN2 1154 aa16.51■□□□□ 0.23
COL12A1-202ENST00000345356 ZNF326Q5BKZ1 582 aaKnown RBP16.51■□□□□ 0.23
COL12A1-202ENST00000345356 CANXP27824 592 aaKnown RBP16.5■□□□□ 0.23
COL12A1-202ENST00000345356 ARXQ96QS3 562 aa16.47■□□□□ 0.23
COL12A1-202ENST00000345356 RTN4Q9NQC3 1192 aaKnown RBP16.47■□□□□ 0.23
COL12A1-202ENST00000345356 FAM9BQ8IZU0 186 aa16.45■□□□□ 0.22
COL12A1-202ENST00000345356 SUPT16HQ9Y5B9 1047 aaKnown RBP16.44■□□□□ 0.22
COL12A1-202ENST00000345356 MYO15BQ96JP2 1530 aa16.42■□□□□ 0.22
COL12A1-202ENST00000345356 UPF2Q9HAU5 1272 aaKnown RBP16.36■□□□□ 0.21
COL12A1-202ENST00000345356 CCDC180Q9P1Z9 1646 aa16.36■□□□□ 0.21
COL12A1-202ENST00000345356 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
COL12A1-202ENST00000345356 NEFMP07197 916 aa16.34■□□□□ 0.21
COL12A1-202ENST00000345356 HSP90AA1P07900 732 aaKnown RBP16.34■□□□□ 0.21
COL12A1-202ENST00000345356 DEKP35659 375 aaKnown RBP16.34■□□□□ 0.21
COL12A1-202ENST00000345356 TONSLQ96HA7 1378 aa16.31■□□□□ 0.2
COL12A1-202ENST00000345356 NOP58Q9Y2X3 529 aaKnown RBP16.29■□□□□ 0.2
COL12A1-202ENST00000345356 ERICH6BQ5W0A0 696 aa16.27■□□□□ 0.2
COL12A1-202ENST00000345356 DDRGK1Q96HY6 314 aa16.27■□□□□ 0.19
COL12A1-202ENST00000345356 SALL2Q9Y467 1007 aaPredicted RBP16.26■□□□□ 0.19
COL12A1-202ENST00000345356 MRS2Q9HD23 443 aa16.25■□□□□ 0.19
COL12A1-202ENST00000345356 RBM19Q9Y4C8 960 aaKnown RBP16.25■□□□□ 0.19
COL12A1-202ENST00000345356 PPM1GO15355 546 aaPredicted RBP16.23■□□□□ 0.19
COL12A1-202ENST00000345356 LAS1LQ9Y4W2 734 aaKnown RBP16.22■□□□□ 0.19
COL12A1-202ENST00000345356 NAP1L5Q96NT1 182 aaPredicted RBP16.21■□□□□ 0.19
COL12A1-202ENST00000345356 TRIM44Q96DX7 344 aaPredicted RBP16.21■□□□□ 0.18
COL12A1-202ENST00000345356 HIRIP3Q9BW71 556 aaPredicted RBP16.21■□□□□ 0.18
COL12A1-202ENST00000345356 TSHZ2Q9NRE2 1034 aa16.18■□□□□ 0.18
COL12A1-202ENST00000345356 TMC1Q8TDI8 760 aa16.18■□□□□ 0.18
COL12A1-202ENST00000345356 PPP4R2Q9NY27 417 aa16.15■□□□□ 0.18
COL12A1-202ENST00000345356 TNNT2P45379 298 aaPredicted RBP16.14■□□□□ 0.17
COL12A1-202ENST00000345356 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.13■□□□□ 0.17
COL12A1-202ENST00000345356 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.13■□□□□ 0.17
COL12A1-202ENST00000345356 BECN1Q14457 450 aa16.12■□□□□ 0.17
COL12A1-202ENST00000345356 P3H3Q8IVL6 736 aa16.08■□□□□ 0.16
COL12A1-202ENST00000345356 B4GALNT3Q6L9W6 998 aa16.05■□□□□ 0.16
COL12A1-202ENST00000345356 SENP3-EIF4A1A0A087X0R7 540 aa15.96■□□□□ 0.15
COL12A1-202ENST00000345356 EIF4G2P78344 907 aaKnown RBP eCLIP15.96■□□□□ 0.15
COL12A1-202ENST00000345356 GOLGA6L22H0YM25 854 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms