Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 FP325330.2-201ENST00000624219 5630 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.05□□□□□ -0.32
CLRN1P58418 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 AC106886.1-201ENST00000568660 600 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.05□□□□□ -0.32
CLRN1P58418 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 AC008825.2-201ENST00000603374 718 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 AL358472.3-201ENST00000608147 415 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 AL162274.1-201ENST00000617191 1098 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 AC027601.3-201ENST00000622907 509 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 AC136759.1-202ENST00000530858 2194 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.05□□□□□ -0.32
CLRN1P58418 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.05□□□□□ -0.32
CLRN1P58418 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 AC009093.10-201ENST00000641956 1442 ntBASIC13.05□□□□□ -0.32
CLRN1P58418 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLRN1P58418 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.04□□□□□ -0.32
CLRN1P58418 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.04□□□□□ -0.32
CLRN1P58418 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.04□□□□□ -0.32
CLRN1P58418 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.04□□□□□ -0.32
CLRN1P58418 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLRN1P58418 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.04□□□□□ -0.32
CLRN1P58418 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms