Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CDK4P1-201ENST00000454213 828 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC18.45■□□□□ 0.54
COL18A1P39060 BCL2L12P1-201ENST00000508390 733 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 AL139424.3-202ENST00000641619 917 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL18A1P39060 AC103702.1-201ENST00000548801 2630 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.45■□□□□ 0.54
COL18A1P39060 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL18A1P39060 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL18A1P39060 NHP2P1-201ENST00000335274 462 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC18.45■□□□□ 0.54
COL18A1P39060 KRT8P30-201ENST00000432100 650 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC18.45■□□□□ 0.54
COL18A1P39060 RN7SL684P-201ENST00000465665 294 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 ACY3-202ENST00000529256 933 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 AC132812.1-201ENST00000583145 892 ntBASIC18.45■□□□□ 0.54
COL18A1P39060 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC18.45■□□□□ 0.54
COL18A1P39060 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.44■□□□□ 0.54
COL18A1P39060 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
COL18A1P39060 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.44■□□□□ 0.54
COL18A1P39060 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 MED11-202ENST00000573708 802 ntTSL 2 BASIC18.44■□□□□ 0.54
COL18A1P39060 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC18.44■□□□□ 0.54
COL18A1P39060 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL18A1P39060 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL18A1P39060 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL18A1P39060 WASH7P-201ENST00000488147 1351 ntBASIC18.44■□□□□ 0.54
COL18A1P39060 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.44■□□□□ 0.54
COL18A1P39060 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.44■□□□□ 0.54
COL18A1P39060 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL18A1P39060 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC18.43■□□□□ 0.54
COL18A1P39060 HNRNPA1P10-201ENST00000444945 962 ntBASIC18.43■□□□□ 0.54
COL18A1P39060 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 NEK4P3-201ENST00000604859 544 ntBASIC18.43■□□□□ 0.54
COL18A1P39060 BAP1-211ENST00000615113 489 ntBASIC18.43■□□□□ 0.54
COL18A1P39060 AL357143.1-203ENST00000639750 881 ntBASIC18.43■□□□□ 0.54
COL18A1P39060 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC18.43■□□□□ 0.54
COL18A1P39060 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 ADK-205ENST00000539909 1866 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 NRADDP-202ENST00000641269 1585 ntBASIC18.43■□□□□ 0.54
COL18A1P39060 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL18A1P39060 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.43■□□□□ 0.54
COL18A1P39060 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL18A1P39060 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 PMEL-214ENST00000550447 901 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 MIR4254-201ENST00000581063 76 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms