Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
PDLIM1O00151 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM1O00151 LINC02560-201ENST00000596379 459 ntBASIC13.97□□□□□ -0.17
PDLIM1O00151 AC004461.2-201ENST00000629517 803 ntBASIC13.97□□□□□ -0.17
PDLIM1O00151 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM1O00151 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.97□□□□□ -0.17
PDLIM1O00151 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
PDLIM1O00151 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM1O00151 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM1O00151 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.97□□□□□ -0.17
PDLIM1O00151 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
PDLIM1O00151 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM1O00151 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM1O00151 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM1O00151 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM1O00151 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
PDLIM1O00151 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM1O00151 FAM90A11P-201ENST00000518378 2218 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
PDLIM1O00151 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM1O00151 AL731571.1-201ENST00000617058 5428 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM1O00151 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM1O00151 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM1O00151 SPDYE18-201ENST00000510091 1050 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM1O00151 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.96□□□□□ -0.17
PDLIM1O00151 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.96□□□□□ -0.17
PDLIM1O00151 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 AC004790.1-201ENST00000612686 536 ntBASIC13.96□□□□□ -0.17
PDLIM1O00151 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM1O00151 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM1O00151 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
PDLIM1O00151 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM1O00151 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM1O00151 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM1O00151 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.96□□□□□ -0.18
PDLIM1O00151 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.96□□□□□ -0.18
PDLIM1O00151 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM1O00151 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC13.95□□□□□ -0.18
PDLIM1O00151 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 AP000437.1-201ENST00000624057 2085 ntBASIC13.95□□□□□ -0.18
PDLIM1O00151 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 PCDHB17P-202ENST00000623466 3066 ntBASIC13.95□□□□□ -0.18
PDLIM1O00151 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC13.95□□□□□ -0.18
PDLIM1O00151 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM1O00151 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 RPL13P2-201ENST00000440687 659 ntBASIC13.95□□□□□ -0.18
PDLIM1O00151 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.95□□□□□ -0.18
PDLIM1O00151 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.95□□□□□ -0.18
PDLIM1O00151 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM1O00151 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
PDLIM1O00151 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.95□□□□□ -0.18
PDLIM1O00151 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms