Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD4P09016 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.3□□□□□ -0.28
HOXD4P09016 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD4P09016 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXD4P09016 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 FXNP2-201ENST00000411625 547 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXD4P09016 Z97180.1-201ENST00000445173 988 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 PUDPP3-201ENST00000445368 636 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 MAGEA5-201ENST00000446757 942 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 MPRIPP1-201ENST00000452433 1089 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HOXD4P09016 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.3□□□□□ -0.28
HOXD4P09016 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXD4P09016 AC097724.1-201ENST00000609581 426 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 AC091544.8-201ENST00000619490 361 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
HOXD4P09016 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 AC004899.1-201ENST00000424687 1714 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 FGD5P1-202ENST00000614866 2498 ntBASIC13.3□□□□□ -0.28
HOXD4P09016 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD4P09016 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HOXD4P09016 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HOXD4P09016 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 RN7SL720P-201ENST00000488178 304 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 IMP3P2-201ENST00000489760 475 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 MARK2P5-201ENST00000507649 634 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 AC022217.1-201ENST00000521069 738 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXD4P09016 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.29□□□□□ -0.28
HOXD4P09016 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXD4P09016 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
HOXD4P09016 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.29□□□□□ -0.28
HOXD4P09016 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
HOXD4P09016 AP001505.2-201ENST00000616815 443 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms