Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.12□□□□□ -0.15
CLDN9O95484 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLDN9O95484 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.12□□□□□ -0.15
CLDN9O95484 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CLDN9O95484 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
CLDN9O95484 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 AC112492.5-201ENST00000421897 457 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 NME2P1-201ENST00000426182 414 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 AL161932.2-201ENST00000435436 679 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 AL355994.2-201ENST00000447882 704 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.12□□□□□ -0.15
CLDN9O95484 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 LINC02084-201ENST00000606069 1096 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 AHCYP2-201ENST00000430630 1300 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.12□□□□□ -0.15
CLDN9O95484 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.11□□□□□ -0.15
CLDN9O95484 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.11□□□□□ -0.15
CLDN9O95484 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.11□□□□□ -0.15
CLDN9O95484 KRT17P7-201ENST00000451704 1104 ntBASIC14.11□□□□□ -0.15
CLDN9O95484 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.11□□□□□ -0.15
CLDN9O95484 C2orf69P2-201ENST00000562032 1123 ntBASIC14.11□□□□□ -0.15
CLDN9O95484 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 AL136301.1-201ENST00000615830 422 ntBASIC14.11□□□□□ -0.15
CLDN9O95484 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 RHOXF1P1-202ENST00000635473 501 ntBASIC14.11□□□□□ -0.15
CLDN9O95484 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CLDN9O95484 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.11□□□□□ -0.15
CLDN9O95484 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLDN9O95484 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms