Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AC004832.2-201ENST00000426397 482 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AL450487.1-201ENST00000426799 995 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 HTR5BP-201ENST00000430851 1154 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 ALG1L5P-201ENST00000482043 771 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 KRT126P-201ENST00000549467 1181 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AC010336.2-201ENST00000564226 506 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 AC135782.3-201ENST00000562782 2105 ntBASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
RCL1Q9Y2P8 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 AP002761.4-201ENST00000565433 3361 ntBASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
RCL1Q9Y2P8 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms