Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 DUX4L46-201ENST00000566845 751 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 BNIP3P29-201ENST00000598302 571 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AL359881.2-201ENST00000602973 570 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AC011447.5-201ENST00000616168 564 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 PEG13-201ENST00000631594 5667 ntBASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 HSPA7-201ENST00000445535 1927 ntBASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNE3Q6ZMZ3 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SYNE3Q6ZMZ3 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.21■□□□□ 0.34
SYNE3Q6ZMZ3 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 AC015818.8-201ENST00000587907 1519 ntBASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SYNE3Q6ZMZ3 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 AC126335.2-201ENST00000623362 4637 ntBASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 KRT8P28-201ENST00000433288 1390 ntBASIC17.19■□□□□ 0.34
SYNE3Q6ZMZ3 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms