Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC074044.1-201ENST00000609673 707 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AL360270.3-201ENST00000609118 1348 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC010327.5-201ENST00000586923 3061 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC055811.4-201ENST00000624039 1754 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC092135.3-201ENST00000624151 1846 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC152010.1-201ENST00000415779 2006 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 YBX1P6-201ENST00000442962 1002 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 TMEM198B-204ENST00000484016 896 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC105129.2-201ENST00000559536 390 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AL022328.3-201ENST00000607943 679 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AL022328.1-201ENST00000610050 478 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms