Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM1Q2M3G4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM1Q2M3G4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM1Q2M3G4 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SHROOM1Q2M3G4 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.84■□□□□ 0.29
SHROOM1Q2M3G4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 AC007686.3-201ENST00000619017 3487 ntBASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
SHROOM1Q2M3G4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 HLA-DMA-203ENST00000395305 777 ntBASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 LINC00115-201ENST00000473798 1317 ntBASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AC005586.2-201ENST00000563946 837 ntBASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AC007952.4-201ENST00000573866 637 ntBASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AC021016.3-201ENST00000608367 477 ntBASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM1Q2M3G4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AL591122.2-201ENST00000624125 1853 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 CCT8L1P-201ENST00000465400 1674 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PKD1P5-201ENST00000532415 10291 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 RPL18AP8-201ENST00000486071 528 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AC026410.1-201ENST00000507366 1101 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AP000911.2-201ENST00000534330 502 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AC127024.7-201ENST00000625101 200 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 AC012617.1-204ENST00000586340 2305 ntBASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM1Q2M3G4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms