Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SOCS2P1-201ENST00000417727 557 ntBASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PMS2P2-201ENST00000425039 1128 ntBASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AQP6-203ENST00000551733 849 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 BRI3BPP1-201ENST00000594224 787 ntBASIC11.28□□□□□ -0.6
HIST1H1AQ02539 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC009118.2-201ENST00000613275 655 ntBASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC11.28□□□□□ -0.6
HIST1H1AQ02539 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 CICP16-201ENST00000502609 2813 ntBASIC11.27□□□□□ -0.6
HIST1H1AQ02539 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
HIST1H1AQ02539 CSPG4P11-201ENST00000560634 4910 ntBASIC11.27□□□□□ -0.61
HIST1H1AQ02539 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 LRRC59-203ENST00000576448 1531 ntBASIC11.27□□□□□ -0.61
HIST1H1AQ02539 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HIST1H1AQ02539 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms