Protein–RNA interactions for Protein: P60709

ACTB, Actin, cytoplasmic 1, humanhuman

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTBP60709 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 AL158070.2-201ENST00000623713 1621 ntBASIC12.62□□□□□ -0.39
ACTBP60709 PTPRVP-205ENST00000641549 5067 ntBASIC12.62□□□□□ -0.39
ACTBP60709 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.62□□□□□ -0.39
ACTBP60709 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 AC055876.3-201ENST00000431496 288 ntBASIC12.62□□□□□ -0.39
ACTBP60709 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.62□□□□□ -0.39
ACTBP60709 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.62□□□□□ -0.39
ACTBP60709 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.62□□□□□ -0.39
ACTBP60709 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.62□□□□□ -0.39
ACTBP60709 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.62□□□□□ -0.39
ACTBP60709 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 AC138649.4-201ENST00000612222 287 ntBASIC12.62□□□□□ -0.39
ACTBP60709 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 AL109936.8-201ENST00000641772 604 ntBASIC12.62□□□□□ -0.39
ACTBP60709 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
ACTBP60709 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
ACTBP60709 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ACTBP60709 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.62□□□□□ -0.39
ACTBP60709 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 AL136172.1-201ENST00000598590 1394 ntBASIC12.61□□□□□ -0.39
ACTBP60709 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ACTBP60709 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ACTBP60709 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.61□□□□□ -0.39
ACTBP60709 RFPL4AP1-201ENST00000530883 850 ntBASIC12.61□□□□□ -0.39
ACTBP60709 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 AC044860.1-202ENST00000559481 777 ntBASIC12.61□□□□□ -0.39
ACTBP60709 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.61□□□□□ -0.39
ACTBP60709 AL844908.2-201ENST00000609461 460 ntBASIC12.61□□□□□ -0.39
ACTBP60709 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.61□□□□□ -0.39
ACTBP60709 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.61□□□□□ -0.39
ACTBP60709 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.61□□□□□ -0.39
ACTBP60709 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
ACTBP60709 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ACTBP60709 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.61□□□□□ -0.39
ACTBP60709 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms