Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 AC090505.1-201ENST00000430515 1834 ntBASIC13.85□□□□□ -0.19
LIM2P55344 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 AC097376.2-205ENST00000610159 5334 ntBASIC13.85□□□□□ -0.19
LIM2P55344 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
LIM2P55344 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 AL157407.1-201ENST00000435784 904 ntBASIC13.84□□□□□ -0.19
LIM2P55344 FAM58BP-201ENST00000439056 645 ntBASIC13.84□□□□□ -0.19
LIM2P55344 AL645933.1-201ENST00000440087 609 ntBASIC13.84□□□□□ -0.19
LIM2P55344 KLF2P1-201ENST00000447438 1042 ntBASIC13.84□□□□□ -0.19
LIM2P55344 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.84□□□□□ -0.19
LIM2P55344 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.84□□□□□ -0.19
LIM2P55344 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
LIM2P55344 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.84□□□□□ -0.19
LIM2P55344 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 AC011498.7-201ENST00000624986 2027 ntBASIC13.84□□□□□ -0.19
LIM2P55344 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.84□□□□□ -0.19
LIM2P55344 TMBIM7P-202ENST00000641474 1516 ntBASIC13.84□□□□□ -0.19
LIM2P55344 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.84□□□□□ -0.19
LIM2P55344 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LIM2P55344 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LIM2P55344 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.83□□□□□ -0.19
LIM2P55344 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.83□□□□□ -0.19
LIM2P55344 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
LIM2P55344 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
LIM2P55344 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LIM2P55344 AC016397.2-201ENST00000624848 1985 ntBASIC13.83□□□□□ -0.19
LIM2P55344 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LIM2P55344 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LIM2P55344 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LIM2P55344 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LIM2P55344 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms