Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC17.13■□□□□ 0.33
MRE11P49959 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MRE11P49959 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MRE11P49959 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MRE11P49959 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.12■□□□□ 0.33
MRE11P49959 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 NCLP1-201ENST00000445357 1963 ntBASIC17.12■□□□□ 0.33
MRE11P49959 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MRE11P49959 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 SPCS2P4-201ENST00000436160 681 ntBASIC17.12■□□□□ 0.33
MRE11P49959 GOLGA2P4-201ENST00000441462 777 ntBASIC17.12■□□□□ 0.33
MRE11P49959 AC234783.1-201ENST00000441761 496 ntBASIC17.12■□□□□ 0.33
MRE11P49959 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
MRE11P49959 LINC01225-203ENST00000563550 1244 ntBASIC17.12■□□□□ 0.33
MRE11P49959 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.12■□□□□ 0.33
MRE11P49959 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
MRE11P49959 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 AP000437.1-201ENST00000624057 2085 ntBASIC17.12■□□□□ 0.33
MRE11P49959 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRE11P49959 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MRE11P49959 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
MRE11P49959 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MRE11P49959 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
MRE11P49959 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
MRE11P49959 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
MRE11P49959 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.11■□□□□ 0.33
MRE11P49959 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC17.11■□□□□ 0.33
MRE11P49959 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.11■□□□□ 0.33
MRE11P49959 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.11■□□□□ 0.33
MRE11P49959 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.11■□□□□ 0.33
MRE11P49959 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.11■□□□□ 0.33
MRE11P49959 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.11■□□□□ 0.33
MRE11P49959 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC17.11■□□□□ 0.33
MRE11P49959 AL031595.1-201ENST00000623969 4709 ntBASIC17.11■□□□□ 0.33
MRE11P49959 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MRE11P49959 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC17.1■□□□□ 0.33
MRE11P49959 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
MRE11P49959 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC17.1■□□□□ 0.33
MRE11P49959 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC17.1■□□□□ 0.33
MRE11P49959 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRE11P49959 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MRE11P49959 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MRE11P49959 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.1■□□□□ 0.33
MRE11P49959 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms