Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.22□□□□□ -0.45
HOXA1P49639 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.22□□□□□ -0.45
HOXA1P49639 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.22□□□□□ -0.45
HOXA1P49639 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.22□□□□□ -0.45
HOXA1P49639 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXA1P49639 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 FAM90A11P-201ENST00000518378 2218 ntBASIC12.22□□□□□ -0.45
HOXA1P49639 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXA1P49639 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXA1P49639 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXA1P49639 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 PCDHA5-203ENST00000614258 4248 ntBASIC12.21□□□□□ -0.45
HOXA1P49639 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXA1P49639 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXA1P49639 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 RPL37AP1-201ENST00000412502 279 ntBASIC12.21□□□□□ -0.45
HOXA1P49639 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXA1P49639 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXA1P49639 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXA1P49639 AC010327.4-202ENST00000591484 748 ntBASIC12.21□□□□□ -0.45
HOXA1P49639 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXA1P49639 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 AP001267.2-201ENST00000532619 2086 ntBASIC12.21□□□□□ -0.45
HOXA1P49639 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXA1P49639 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXA1P49639 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HOXA1P49639 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 PHYHIP-201ENST00000321613 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms