Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 FAM90A7P-201ENST00000382628 1395 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 FAM90A23P-201ENST00000400136 1395 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTPN9P43378 KRT8P24-201ENST00000560290 1559 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTPN9P43378 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 AC090643.2-201ENST00000623442 2029 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.11■□□□□ 0.01
PTPN9P43378 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.11■□□□□ 0.01
PTPN9P43378 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTPN9P43378 USP17L6P-201ENST00000382470 1197 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.11■□□□□ 0.01
PTPN9P43378 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 SCARNA21-201ENST00000517026 139 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 AC022217.1-201ENST00000521069 738 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.11■□□□□ 0.01
PTPN9P43378 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.11■□□□□ 0.01
PTPN9P43378 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.11■□□□□ 0.01
PTPN9P43378 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
PTPN9P43378 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 AC090386.2-201ENST00000623010 1039 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 AL033527.4-201ENST00000641026 673 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 AC004899.1-201ENST00000424687 1714 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 AHCYP4-201ENST00000419201 1315 ntBASIC15.11■□□□□ 0.01
PTPN9P43378 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTPN9P43378 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN9P43378 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PTPN9P43378 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN9P43378 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PTPN9P43378 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTPN9P43378 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTPN9P43378 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTPN9P43378 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN9P43378 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTPN9P43378 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN9P43378 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN9P43378 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 AC008805.1-201ENST00000590892 364 ntBASIC15.1■□□□□ 0.01
PTPN9P43378 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.1■□□□□ 0.01
PTPN9P43378 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.1■□□□□ 0.01
PTPN9P43378 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN9P43378 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN9P43378 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN9P43378 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
PTPN9P43378 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms