Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC007718.1-201ENST00000621078 280 ntBASIC14.19□□□□□ -0.14
TNFP01375 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.19□□□□□ -0.14
TNFP01375 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CAP2P1-201ENST00000557743 1390 ntBASIC14.19□□□□□ -0.14
TNFP01375 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 CICP14-201ENST00000629111 2732 ntBASIC14.19□□□□□ -0.14
TNFP01375 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.19□□□□□ -0.14
TNFP01375 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
TNFP01375 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 AP002353.1-201ENST00000528257 1599 ntBASIC14.18□□□□□ -0.14
TNFP01375 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 AC092053.3-201ENST00000641308 4975 ntBASIC14.18□□□□□ -0.14
TNFP01375 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 AL583805.1-201ENST00000391389 531 ntBASIC14.18□□□□□ -0.14
TNFP01375 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 AC022447.6-201ENST00000515522 438 ntBASIC14.18□□□□□ -0.14
TNFP01375 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.18□□□□□ -0.14
TNFP01375 MIR6074-201ENST00000612054 107 ntBASIC14.18□□□□□ -0.14
TNFP01375 AC090386.2-201ENST00000623010 1039 ntBASIC14.18□□□□□ -0.14
TNFP01375 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
TNFP01375 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
TNFP01375 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.18□□□□□ -0.14
TNFP01375 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
TNFP01375 AC215219.1-201ENST00000400706 1817 ntBASIC14.18□□□□□ -0.14
TNFP01375 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 AC006480.2-201ENST00000609770 1337 ntBASIC14.17□□□□□ -0.14
TNFP01375 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
TNFP01375 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 MTHFR-210ENST00000641407 2387 ntBASIC14.17□□□□□ -0.14
TNFP01375 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
TNFP01375 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 DUTP3-201ENST00000450025 415 ntBASIC14.17□□□□□ -0.14
TNFP01375 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TNFP01375 AC114947.1-202ENST00000514136 344 ntBASIC14.17□□□□□ -0.14
TNFP01375 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.17□□□□□ -0.14
TNFP01375 AC093752.3-201ENST00000567343 901 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms